Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14525

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,762,763	-				+0.3
2,762,823	+				-0.4
2,762,832	+				+0.1
2,762,832	+				+0.5
2,762,832	+				+0.2
2,762,832	+				-0.9
2,762,832	+				+1.8
2,762,832	+				+1.4
2,762,833	-				-2.9
2,762,833	-				-1.1
2,762,833	-				-0.2
2,762,833	-				+0.3
2,762,833	-				-1.0
2,762,833	-				+0.3
2,762,833	-				-0.1
2,762,846	+				+1.4
2,762,934	-		LU632_RS14515	0.18	+0.2
2,762,990	-		LU632_RS14515	0.29	+1.2
2,763,058	-		LU632_RS14515	0.42	-0.3
2,763,058	-		LU632_RS14515	0.42	+0.6
2,763,110	+		LU632_RS14515	0.51	+0.9
2,763,147	+		LU632_RS14515	0.58	+4.4
2,763,148	-		LU632_RS14515	0.58	-1.8
2,763,154	+		LU632_RS14515	0.59	+0.3
2,763,190	-		LU632_RS14515	0.66	+0.9
2,763,291	-		LU632_RS14515	0.85	-0.1
2,763,291	-		LU632_RS14515	0.85	-1.0
2,763,490	-		LU632_RS14520	0.32	-1.2
2,763,656	+		LU632_RS14520	0.74	-0.4
2,763,656	+		LU632_RS14520	0.74	-1.0
2,763,752	+				+1.2
2,763,774	+				-0.5
2,763,775	-				-0.7
2,763,782	-				+0.6
2,763,842	-		LU632_RS14525	0.26	+0.2
2,763,842	-		LU632_RS14525	0.26	-1.9
2,763,859	+		LU632_RS14525	0.32	-0.2
2,763,859	+		LU632_RS14525	0.32	-0.8
2,763,859	+		LU632_RS14525	0.32	+1.3
2,763,859	+		LU632_RS14525	0.32	-0.6
2,763,860	-		LU632_RS14525	0.32	+0.9
2,763,860	-		LU632_RS14525	0.32	+2.4
2,763,860	-		LU632_RS14525	0.32	-0.4
2,763,905	-		LU632_RS14525	0.46	-0.2
2,763,905	-		LU632_RS14525	0.46	-0.1
2,763,982	+		LU632_RS14525	0.71	-0.0
2,763,982	+		LU632_RS14525	0.71	-0.9
2,763,983	-		LU632_RS14525	0.71	+0.3
2,763,983	-		LU632_RS14525	0.71	-0.6
2,763,983	-		LU632_RS14525	0.71	+0.0
2,764,010	+		LU632_RS14525	0.80	-0.1
2,764,088	-				-0.9
2,764,131	+				-1.1
2,764,131	+				-1.0
2,764,132	-				-0.1
2,764,145	+		LU632_RS14530	0.11	+0.3
2,764,227	+		LU632_RS14530	0.23	-0.3
2,764,228	-		LU632_RS14530	0.23	+0.1
2,764,228	-		LU632_RS14530	0.23	+2.9
2,764,274	+		LU632_RS14530	0.30	-2.2
2,764,275	-		LU632_RS14530	0.30	-0.8
2,764,275	-		LU632_RS14530	0.30	-1.0
2,764,299	+		LU632_RS14530	0.34	+0.3
2,764,314	+		LU632_RS14530	0.36	-0.3
2,764,315	-		LU632_RS14530	0.36	+0.6
2,764,316	+		LU632_RS14530	0.36	+0.9
2,764,316	+		LU632_RS14530	0.36	-0.1
2,764,316	+		LU632_RS14530	0.36	-1.7
2,764,317	-		LU632_RS14530	0.36	+0.9
2,764,317	-		LU632_RS14530	0.36	+0.8
2,764,471	-		LU632_RS14530	0.59	+0.3
2,764,471	-		LU632_RS14530	0.59	-0.1
2,764,484	-		LU632_RS14530	0.61	+1.9
2,764,486	+		LU632_RS14530	0.61	+1.0
2,764,486	+		LU632_RS14530	0.61	+0.1
2,764,486	+		LU632_RS14530	0.61	-0.7
2,764,490	+		LU632_RS14530	0.61	+1.6
2,764,490	+		LU632_RS14530	0.61	+0.1
2,764,491	-		LU632_RS14530	0.62	-3.1
2,764,492	+		LU632_RS14530	0.62	+1.3
2,764,493	-		LU632_RS14530	0.62	-0.8
2,764,493	-		LU632_RS14530	0.62	-2.0
2,764,493	-		LU632_RS14530	0.62	+0.3
2,764,493	-		LU632_RS14530	0.62	+1.2
2,764,493	-		LU632_RS14530	0.62	+1.3
2,764,493	-		LU632_RS14530	0.62	+1.9
2,764,493	-		LU632_RS14530	0.62	+1.4
2,764,514	-		LU632_RS14530	0.65	+0.2
2,764,559	+		LU632_RS14530	0.71	-0.5
2,764,560	-		LU632_RS14530	0.72	-0.3
2,764,600	+		LU632_RS14530	0.77	-0.9
2,764,600	+		LU632_RS14530	0.77	-0.4
2,764,600	+		LU632_RS14530	0.77	-0.4
2,764,600	+		LU632_RS14530	0.77	-1.1
2,764,600	+		LU632_RS14530	0.77	-0.4
2,764,601	-		LU632_RS14530	0.78	-0.4
2,764,601	-		LU632_RS14530	0.78	+0.0
2,764,603	+		LU632_RS14530	0.78	+0.1
2,764,622	+		LU632_RS14530	0.81	+1.1
2,764,623	-		LU632_RS14530	0.81	-0.1
2,764,623	-		LU632_RS14530	0.81	+1.2
2,764,881	+		LU632_RS14535	0.39	+1.0
2,764,921	+		LU632_RS14535	0.50	-2.2
2,764,921	+		LU632_RS14535	0.50	+0.9
2,765,012	-		LU632_RS14535	0.77	+1.2