Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13965

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,675,154	-				-0.7
2,675,216	-		LU632_RS13960	0.17	+3.5
2,675,245	-		LU632_RS13960	0.23	+2.4
2,675,251	+		LU632_RS13960	0.24	-0.3
2,675,252	-		LU632_RS13960	0.24	+0.5
2,675,475	+		LU632_RS13960	0.68	-1.2
2,675,507	+		LU632_RS13960	0.75	+0.6
2,675,508	-		LU632_RS13960	0.75	-1.4
2,675,633	-				-0.8
2,675,633	-				+0.3
2,675,633	-				-1.1
2,675,679	+				-0.3
2,675,696	+				+0.8
2,675,697	-				+0.7
2,675,711	+				-1.2
2,675,711	+				-1.6
2,675,712	-				-0.7
2,675,712	-				+0.4
2,675,712	-				-0.2
2,675,718	-				+0.2
2,675,772	+				-0.2
2,675,772	+				+0.3
2,675,773	-				+0.5
2,675,794	-				-1.3
2,675,862	+				+0.4
2,675,862	+				-1.2
2,675,863	-				+0.3
2,675,863	-				+0.3
2,675,990	-				-2.5
2,676,029	+				-0.7
2,676,042	-				-0.2
2,676,042	-				-0.2
2,676,234	-				+1.3
2,676,234	-				-0.2
2,676,400	+		LU632_RS13965	0.15	-1.6
2,676,400	+		LU632_RS13965	0.15	-1.7
2,676,401	+		LU632_RS13965	0.15	+0.7
2,676,401	-		LU632_RS13965	0.15	+0.3
2,676,401	-		LU632_RS13965	0.15	+0.8
2,676,420	-		LU632_RS13965	0.16	-0.5
2,676,447	-		LU632_RS13965	0.17	-1.2
2,676,517	+		LU632_RS13965	0.19	-0.4
2,676,583	+		LU632_RS13965	0.21	-1.0
2,676,583	+		LU632_RS13965	0.21	-1.6
2,676,584	-		LU632_RS13965	0.21	+0.8
2,676,690	-		LU632_RS13965	0.25	-1.5
2,676,810	-		LU632_RS13965	0.30	-0.7
2,676,811	+		LU632_RS13965	0.30	-0.8
2,676,812	-		LU632_RS13965	0.30	-0.0
2,676,812	-		LU632_RS13965	0.30	-2.6
2,676,894	-		LU632_RS13965	0.33	-0.1
2,676,902	+		LU632_RS13965	0.33	+0.4
2,676,903	-		LU632_RS13965	0.33	+0.8
2,676,903	-		LU632_RS13965	0.33	+0.1
2,676,929	+		LU632_RS13965	0.34	+1.0
2,676,930	-		LU632_RS13965	0.34	-0.3
2,677,011	-		LU632_RS13965	0.37	-0.5
2,677,095	-		LU632_RS13965	0.40	-1.5
2,677,137	-		LU632_RS13965	0.41	-0.8
2,677,321	+		LU632_RS13965	0.48	+0.3
2,677,356	+		LU632_RS13965	0.49	-1.2
2,677,357	-		LU632_RS13965	0.49	-0.3
2,677,552	-		LU632_RS13965	0.56	-0.2
2,677,574	+		LU632_RS13965	0.57	+0.5
2,677,580	+		LU632_RS13965	0.57	-0.9
2,677,581	-		LU632_RS13965	0.57	+0.0
2,677,631	-		LU632_RS13965	0.59	-2.4
2,677,631	-		LU632_RS13965	0.59	-0.2
2,677,754	+		LU632_RS13965	0.64	-0.7
2,677,928	+		LU632_RS13965	0.70	-0.9
2,677,929	-		LU632_RS13965	0.70	+0.0
2,677,929	-		LU632_RS13965	0.70	+1.3
2,677,929	-		LU632_RS13965	0.70	-0.5
2,677,954	-		LU632_RS13965	0.71	+1.7
2,677,954	-		LU632_RS13965	0.71	-1.5
2,677,954	-		LU632_RS13965	0.71	-0.3
2,677,954	-		LU632_RS13965	0.71	+0.5
2,677,958	+		LU632_RS13965	0.71	-0.6
2,677,959	-		LU632_RS13965	0.71	+3.6
2,677,996	+		LU632_RS13965	0.72	-0.7
2,677,997	-		LU632_RS13965	0.72	-0.7
2,678,034	+		LU632_RS13965	0.74	+0.7
2,678,242	+		LU632_RS13965	0.81	-2.0
2,678,242	+		LU632_RS13965	0.81	+0.6
2,678,242	+		LU632_RS13965	0.81	-0.3
2,678,359	-		LU632_RS13965	0.85	-1.3
2,678,361	-		LU632_RS13965	0.85	+0.5
2,678,629	+				-0.2
2,678,630	-				-2.3
2,678,712	+				-1.0
2,678,742	-				-1.3
2,678,843	-				-1.2
2,679,439	-				+0.0
2,679,508	+				-0.3
2,679,509	-				+0.4
2,679,556	-				-0.6
2,679,594	-				+0.0
2,679,751	+		LU632_RS13970	0.16	+0.5
2,679,752	-		LU632_RS13970	0.16	+3.6
2,679,755	-		LU632_RS13970	0.16	-0.5