Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13665

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,607,126	-		LU632_RS13655	0.23	-1.3
2,607,174	-		LU632_RS13655	0.34	-0.0
2,607,280	-		LU632_RS13655	0.58	+0.3
2,607,404	-		LU632_RS13655	0.86	+0.2
2,607,411	+		LU632_RS13655	0.87	+3.5
2,607,411	+		LU632_RS13655	0.87	-0.5
2,607,464	+				-2.0
2,607,465	-				-0.8
2,607,465	-				-0.2
2,607,519	+				+1.3
2,607,524	+				-1.2
2,607,525	-				+1.0
2,607,567	+				-0.2
2,607,568	-				-1.3
2,607,607	-				-2.1
2,607,607	-				-1.3
2,607,607	-				-1.7
2,607,610	+				+1.3
2,607,610	+				-1.7
2,607,611	-				-0.3
2,607,611	-				+1.3
2,607,616	+				+2.8
2,607,629	+				-0.3
2,607,639	-				-1.1
2,607,640	+				-0.6
2,607,640	+				-2.2
2,607,640	+				+0.3
2,607,641	-				-1.4
2,607,641	-				-0.4
2,607,641	-				-0.7
2,607,641	-				-0.5
2,607,652	+				-0.4
2,607,676	+				-1.5
2,607,677	-				-1.2
2,607,823	+		LU632_RS13660	0.34	+0.3
2,607,823	+		LU632_RS13660	0.34	-0.1
2,607,861	+		LU632_RS13660	0.44	+0.5
2,607,883	+		LU632_RS13660	0.49	+3.5
2,607,930	+		LU632_RS13660	0.62	+0.4
2,607,931	-		LU632_RS13660	0.62	+0.5
2,607,967	-		LU632_RS13660	0.71	-1.7
2,607,967	-		LU632_RS13660	0.71	+0.0
2,607,970	+		LU632_RS13660	0.72	-0.2
2,607,984	+		LU632_RS13660	0.76	-0.4
2,608,010	+		LU632_RS13660	0.83	+0.2
2,608,023	+		LU632_RS13660	0.86	-2.2
2,608,026	+		LU632_RS13660	0.87	+0.1
2,608,027	-		LU632_RS13660	0.87	-0.4
2,608,054	+				+0.1
2,608,055	-				-0.1
2,608,055	-				-0.5
2,608,055	-				-0.3
2,608,055	-				+0.0
2,608,055	-				+0.5
2,608,055	-				+0.3
2,608,058	+				+1.7
2,608,059	-				-1.1
2,608,059	-				-0.9
2,608,065	-				+0.8
2,608,075	+				-1.1
2,608,075	+				-1.3
2,608,075	+				+1.3
2,608,075	+				+1.0
2,608,075	+				-0.2
2,608,076	-				-0.7
2,608,076	-				-1.4
2,608,076	-				+0.3
2,608,078	+				-0.5
2,608,105	+				-0.2
2,608,106	-				-0.3
2,608,141	+				+0.3
2,608,185	+				-0.6
2,608,255	-	ghrA	LU632_RS13665	0.14	-1.4
2,608,258	-	ghrA	LU632_RS13665	0.14	+3.8
2,608,393	+	ghrA	LU632_RS13665	0.29	-1.2
2,608,394	-	ghrA	LU632_RS13665	0.29	-0.0
2,608,454	+	ghrA	LU632_RS13665	0.35	+0.9
2,608,454	+	ghrA	LU632_RS13665	0.35	-1.6
2,608,455	-	ghrA	LU632_RS13665	0.35	-0.5
2,608,455	-	ghrA	LU632_RS13665	0.35	+0.3
2,608,636	-	ghrA	LU632_RS13665	0.55	-0.5
2,608,743	+	ghrA	LU632_RS13665	0.66	+0.3
2,608,744	-	ghrA	LU632_RS13665	0.66	+1.7
2,608,746	-	ghrA	LU632_RS13665	0.66	-1.6
2,608,753	-	ghrA	LU632_RS13665	0.67	-0.7
2,608,819	+	ghrA	LU632_RS13665	0.74	+0.3
2,608,819	+	ghrA	LU632_RS13665	0.74	-0.4
2,608,835	+	ghrA	LU632_RS13665	0.76	-1.5
2,608,836	+	ghrA	LU632_RS13665	0.76	+0.4
2,609,029	-				-0.9
2,609,158	+				-1.9
2,609,159	-				-0.3
2,609,159	-				+1.8
2,609,159	-				-1.7
2,609,159	-				-1.2
2,609,160	+				+3.5
2,609,160	+				-1.2
2,609,161	-				+0.2
2,609,161	-				-1.0
2,609,207	+				+0.5
2,609,243	-				+0.3
2,609,245	+				+0.8
2,609,245	+				+0.7