Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13595

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,595,635	+	otsA	LU632_RS13590	0.30	-0.6
2,595,639	+	otsA	LU632_RS13590	0.31	+0.4
2,595,646	+	otsA	LU632_RS13590	0.31	-0.3
2,595,780	-	otsA	LU632_RS13590	0.41	+1.1
2,595,807	+	otsA	LU632_RS13590	0.43	-1.2
2,595,808	-	otsA	LU632_RS13590	0.43	-1.7
2,595,813	-	otsA	LU632_RS13590	0.43	-1.1
2,596,068	-	otsA	LU632_RS13590	0.61	-1.0
2,596,140	+	otsA	LU632_RS13590	0.66	+2.3
2,596,141	-	otsA	LU632_RS13590	0.66	-1.4
2,596,211	+	otsA	LU632_RS13590	0.71	-1.9
2,596,211	+	otsA	LU632_RS13590	0.71	-0.2
2,596,211	+	otsA	LU632_RS13590	0.71	-0.5
2,596,212	-	otsA	LU632_RS13590	0.71	-0.7
2,596,228	-	otsA	LU632_RS13590	0.72	-0.5
2,596,228	-	otsA	LU632_RS13590	0.72	-0.5
2,596,379	+	otsA	LU632_RS13590	0.83	-1.2
2,596,379	+	otsA	LU632_RS13590	0.83	-0.8
2,596,418	+	otsA	LU632_RS13590	0.86	-0.5
2,596,418	+	otsA	LU632_RS13590	0.86	+0.4
2,596,426	-	otsA	LU632_RS13590	0.87	+0.5
2,596,530	+				-0.9
2,596,594	+				-0.8
2,596,594	+				-0.9
2,596,594	+				-1.2
2,596,595	-				-1.1
2,596,595	-				+0.1
2,596,595	-				-0.4
2,596,615	-				+0.5
2,596,652	+				-2.2
2,596,653	-				-2.6
2,596,659	-				-1.2
2,596,823	-	otsB	LU632_RS13595	0.26	-1.3
2,596,846	+	otsB	LU632_RS13595	0.29	+1.2
2,596,847	-	otsB	LU632_RS13595	0.29	-0.5
2,596,847	-	otsB	LU632_RS13595	0.29	-0.3
2,596,995	+	otsB	LU632_RS13595	0.48	-0.5
2,597,067	-	otsB	LU632_RS13595	0.57	-0.4
2,597,349	+				+0.7
2,597,382	-				+1.4
2,597,383	+				-1.1
2,597,384	-				-0.1
2,597,416	+				-0.6
2,597,416	+				+0.4
2,597,416	+				-1.2
2,597,417	-				+0.3
2,597,417	-				-0.7
2,597,417	-				-0.1
2,597,417	-				+0.4
2,597,417	-				+0.8
2,597,431	+				-1.1
2,597,517	-				+0.1
2,597,586	+				-0.4
2,597,640	+				+2.3
2,597,641	-				+0.7
2,597,641	-				-2.4
2,597,641	-				-0.5
2,597,643	+				-1.2
2,597,643	+				-1.1
2,597,644	-				+1.1
2,597,644	-				+1.0
2,597,647	-				+2.7
2,597,648	+				+0.5
2,597,684	-				+0.8
2,597,790	+				+1.8
2,597,794	-				-0.2
2,597,794	-				-0.7
2,597,865	+				-0.3
2,597,865	+				-0.7
2,597,866	-				+1.2
2,597,869	+				-0.6
2,597,870	-				+0.3
2,597,870	-				+0.9
2,597,915	-				-2.0
2,597,953	-				+2.2
2,598,065	+				+0.8
2,598,066	-				-0.4
2,598,125	-				-0.2
2,598,142	+				-1.3