Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13205

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,521,603	+				+1.6
2,521,603	+				-0.3
2,521,603	+				-0.5
2,521,603	+				-0.5
2,521,604	-				-0.6
2,521,620	-				+0.4
2,521,622	+				-2.6
2,521,623	-				-0.3
2,521,670	+				+0.3
2,521,671	-				+0.6
2,521,671	-				+2.7
2,521,671	-				-0.1
2,521,738	-				+0.4
2,521,746	+	rlmA	LU632_RS13200	0.11	+1.1
2,521,747	-	rlmA	LU632_RS13200	0.11	-1.3
2,521,829	+	rlmA	LU632_RS13200	0.21	+2.3
2,521,829	+	rlmA	LU632_RS13200	0.21	-1.7
2,521,830	-	rlmA	LU632_RS13200	0.21	-0.6
2,521,916	+	rlmA	LU632_RS13200	0.31	-0.2
2,521,957	-	rlmA	LU632_RS13200	0.36	+0.4
2,521,957	-	rlmA	LU632_RS13200	0.36	+0.0
2,522,011	+	rlmA	LU632_RS13200	0.43	+0.1
2,522,012	-	rlmA	LU632_RS13200	0.43	+0.8
2,522,045	+	rlmA	LU632_RS13200	0.47	+0.8
2,522,156	+	rlmA	LU632_RS13200	0.60	-1.0
2,522,191	+	rlmA	LU632_RS13200	0.64	-1.0
2,522,191	+	rlmA	LU632_RS13200	0.64	-0.6
2,522,327	+	rlmA	LU632_RS13200	0.81	-0.7
2,522,360	+	rlmA	LU632_RS13200	0.85	+1.4
2,522,361	-	rlmA	LU632_RS13200	0.85	-0.6
2,522,381	+	rlmA	LU632_RS13200	0.87	+1.6
2,522,381	+	rlmA	LU632_RS13200	0.87	-1.0
2,522,382	-	rlmA	LU632_RS13200	0.87	+0.1
2,522,386	+	rlmA	LU632_RS13200	0.88	+1.8
2,522,387	-	rlmA	LU632_RS13200	0.88	-0.5
2,522,550	+				+0.2
2,522,550	+				-0.9
2,522,551	-				+1.4
2,522,551	-				-1.3
2,522,558	+				-0.4
2,522,558	+				-1.6
2,522,573	-				+0.8
2,522,584	+		LU632_RS13205	0.12	+1.7
2,522,585	-		LU632_RS13205	0.13	-0.4
2,522,586	+		LU632_RS13205	0.13	+0.8
2,522,587	-		LU632_RS13205	0.14	-2.3
2,522,587	-		LU632_RS13205	0.14	+1.6
2,522,594	-		LU632_RS13205	0.17	+0.1
2,522,594	-		LU632_RS13205	0.17	+0.8
2,522,666	+		LU632_RS13205	0.56	-2.2
2,522,863	+				-0.9
2,523,107	-	cspE	LU632_RS13210	0.59	+0.8
2,523,136	-	cspE	LU632_RS13210	0.73	+2.0
2,523,150	+	cspE	LU632_RS13210	0.80	+1.0
2,523,151	-	cspE	LU632_RS13210	0.80	+1.0
2,523,180	+				+3.6
2,523,231	+				+2.2
2,523,231	+				+2.7
2,523,236	-				+1.9
2,523,256	-				+0.4
2,523,502	-				+0.2
2,523,597	-				-0.3