Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13015

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,482,586	+	yeaG	LU632_RS13010	0.58	-0.2
2,482,586	+	yeaG	LU632_RS13010	0.58	-1.3
2,482,587	-	yeaG	LU632_RS13010	0.58	-0.1
2,482,629	+	yeaG	LU632_RS13010	0.60	+0.4
2,482,675	-	yeaG	LU632_RS13010	0.62	+0.5
2,482,763	+	yeaG	LU632_RS13010	0.67	+1.0
2,482,809	+	yeaG	LU632_RS13010	0.69	+0.7
2,482,810	-	yeaG	LU632_RS13010	0.69	-0.9
2,482,814	-	yeaG	LU632_RS13010	0.70	-0.8
2,482,867	-	yeaG	LU632_RS13010	0.72	-1.2
2,482,902	+	yeaG	LU632_RS13010	0.74	-1.1
2,482,902	+	yeaG	LU632_RS13010	0.74	-0.6
2,483,114	+	yeaG	LU632_RS13010	0.85	+1.9
2,483,168	+	yeaG	LU632_RS13010	0.88	-0.6
2,483,168	+	yeaG	LU632_RS13010	0.88	-1.5
2,483,196	+	yeaG	LU632_RS13010	0.89	-1.0
2,483,196	+	yeaG	LU632_RS13010	0.89	+0.9
2,483,241	-				+0.8
2,483,241	-				-0.4
2,483,324	+				-0.4
2,483,324	+				-1.3
2,483,325	-				-0.8
2,483,414	+				+0.7
2,483,418	+				+3.2
2,483,419	-				-0.5
2,483,419	-				-0.3
2,483,485	+				-1.3
2,483,591	-				-0.0
2,483,824	+		LU632_RS13015	0.28	+0.5
2,483,824	+		LU632_RS13015	0.28	-0.4
2,483,825	-		LU632_RS13015	0.28	+1.1
2,483,826	+		LU632_RS13015	0.28	+0.5
2,483,826	+		LU632_RS13015	0.28	-0.2
2,483,830	+		LU632_RS13015	0.28	-1.0
2,483,830	+		LU632_RS13015	0.28	+1.8
2,483,906	-		LU632_RS13015	0.34	+0.2
2,483,913	-		LU632_RS13015	0.35	-1.2
2,483,936	-		LU632_RS13015	0.36	-0.4
2,483,959	+		LU632_RS13015	0.38	+0.0
2,484,106	+		LU632_RS13015	0.50	-0.7
2,484,160	+		LU632_RS13015	0.54	-0.8
2,484,300	-		LU632_RS13015	0.65	-0.9
2,484,321	-		LU632_RS13015	0.67	+0.8
2,484,323	-		LU632_RS13015	0.67	+1.2
2,484,341	+		LU632_RS13015	0.68	-0.4
2,484,342	-		LU632_RS13015	0.68	-0.1
2,484,355	+		LU632_RS13015	0.69	-0.2
2,484,355	+		LU632_RS13015	0.69	+1.5
2,484,356	-		LU632_RS13015	0.69	-0.4
2,484,464	+		LU632_RS13015	0.78	+1.0
2,484,465	-		LU632_RS13015	0.78	-0.9
2,484,465	-		LU632_RS13015	0.78	+0.3
2,484,485	-		LU632_RS13015	0.79	+0.6
2,484,485	-		LU632_RS13015	0.79	-0.5
2,484,489	-		LU632_RS13015	0.80	+2.2
2,484,489	-		LU632_RS13015	0.80	-0.9
2,484,489	-		LU632_RS13015	0.80	-0.2
2,484,581	+		LU632_RS13015	0.87	-0.6
2,484,585	-		LU632_RS13015	0.87	+0.2
2,484,585	-		LU632_RS13015	0.87	-0.2
2,484,591	-		LU632_RS13015	0.88	-0.3
2,484,591	-		LU632_RS13015	0.88	-0.4
2,484,593	-		LU632_RS13015	0.88	-0.2
2,484,635	+				-0.2
2,484,641	+				-0.5
2,484,642	-				-1.0
2,484,697	+				+0.2
2,484,697	+				+0.2
2,484,698	-				-2.0
2,484,701	+				-0.2
2,485,375	-				-1.3