Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13000

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,478,570	-				-0.1
2,478,570	-				-1.1
2,478,625	+				-2.3
2,478,642	+				-0.7
2,478,756	+				-0.3
2,478,791	-				-2.0
2,478,855	+				-0.5
2,478,855	+				+0.4
2,478,855	+				-1.1
2,478,855	+				+0.8
2,478,856	-				-1.7
2,478,856	-				-1.0
2,478,856	-				-0.0
2,478,856	-				+0.5
2,478,856	-				-1.5
2,478,856	-				-1.4
2,478,856	-				-0.9
2,478,856	-				-0.8
2,478,857	+				+1.8
2,478,857	+				+1.4
2,478,857	+				-1.7
2,478,857	+				-0.9
2,478,857	+				+0.4
2,478,857	+				-0.7
2,478,858	-				-0.0
2,478,858	-				+0.8
2,478,858	-				+1.8
2,478,858	-				-1.1
2,478,859	+				-0.1
2,478,860	-				+0.5
2,478,864	+				-0.9
2,478,865	-				-0.7
2,478,865	-				+0.1
2,478,926	+				+0.3
2,479,023	-				-0.4
2,479,104	+		LU632_RS13000	0.16	+0.2
2,479,252	-		LU632_RS13000	0.33	+0.9
2,479,252	-		LU632_RS13000	0.33	-1.0
2,479,252	-		LU632_RS13000	0.33	-1.0
2,479,252	-		LU632_RS13000	0.33	-1.7
2,479,443	-		LU632_RS13000	0.54	-0.8
2,479,451	-		LU632_RS13000	0.55	+0.8
2,479,460	+		LU632_RS13000	0.56	+1.1
2,479,507	-		LU632_RS13000	0.62	+0.9
2,479,512	+		LU632_RS13000	0.62	+1.7
2,479,522	-		LU632_RS13000	0.63	+0.4
2,479,582	-		LU632_RS13000	0.70	-1.4
2,479,585	+		LU632_RS13000	0.71	+0.5
2,479,648	+		LU632_RS13000	0.78	-0.5
2,479,649	-		LU632_RS13000	0.78	-0.6
2,479,764	+				+0.0
2,479,764	+				+1.0
2,479,765	-				+0.5
2,479,765	-				-0.9
2,479,765	-				-0.1
2,479,797	-				-2.0
2,479,840	+				+0.2
2,479,864	+				+0.3
2,479,867	+				+0.1
2,479,867	+				-1.2
2,479,868	-				-0.0
2,479,868	-				-0.7
2,479,882	+				+1.1
2,479,882	+				+1.0
2,479,883	-				+0.1
2,479,885	+				+0.4
2,479,945	+				+1.6
2,480,067	+				-0.3
2,480,068	-				+1.8
2,480,172	-		LU632_RS13005	0.17	-1.1
2,480,268	-		LU632_RS13005	0.31	-0.8
2,480,291	-		LU632_RS13005	0.34	-0.6
2,480,291	-		LU632_RS13005	0.34	-0.3
2,480,321	+		LU632_RS13005	0.38	-1.0
2,480,480	+		LU632_RS13005	0.61	+0.7
2,480,481	-		LU632_RS13005	0.61	-2.5
2,480,481	-		LU632_RS13005	0.61	-0.1
2,480,618	+		LU632_RS13005	0.80	-0.8
2,480,618	+		LU632_RS13005	0.80	+0.6
2,480,714	-				-1.3
2,480,714	-				-0.6
2,480,751	-				+1.1
2,480,760	-				-0.3
2,480,760	-				+0.4