Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12480

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,369,807	+				+0.4
2,369,825	-				+0.4
2,369,825	-				-0.3
2,369,847	+				-1.3
2,369,976	+		LU632_RS12470	0.38	+1.3
2,369,976	+		LU632_RS12470	0.38	-0.3
2,369,977	-		LU632_RS12470	0.38	-2.3
2,370,024	+		LU632_RS12470	0.49	+3.8
2,370,024	+		LU632_RS12470	0.49	-0.0
2,370,025	-		LU632_RS12470	0.49	-1.7
2,370,025	-		LU632_RS12470	0.49	-0.2
2,370,025	-		LU632_RS12470	0.49	+0.0
2,370,025	-		LU632_RS12470	0.49	+1.2
2,370,025	-		LU632_RS12470	0.49	+0.3
2,370,157	-		LU632_RS12470	0.79	-0.4
2,370,157	-		LU632_RS12470	0.79	-2.6
2,370,160	+		LU632_RS12470	0.79	-0.3
2,370,229	+				-0.4
2,370,231	+				+0.6
2,370,231	+				-0.1
2,370,232	-				-0.1
2,370,305	-				-1.0
2,370,441	-		LU632_RS12475	0.12	-0.3
2,370,478	+		LU632_RS12475	0.30	+0.4
2,370,478	+		LU632_RS12475	0.30	-0.3
2,370,585	-		LU632_RS12475	0.83	-0.7
2,370,592	+		LU632_RS12475	0.86	+0.2
2,370,606	+				-1.2
2,370,606	+				-1.0
2,370,607	-				+0.8
2,370,834	+				+0.6
2,370,915	-	guaD	LU632_RS12480	0.15	-1.8
2,370,938	+	guaD	LU632_RS12480	0.17	-1.5
2,370,939	-	guaD	LU632_RS12480	0.17	+0.3
2,370,941	-	guaD	LU632_RS12480	0.17	+0.3
2,370,941	-	guaD	LU632_RS12480	0.17	+1.3
2,370,966	-	guaD	LU632_RS12480	0.19	-2.0
2,370,993	+	guaD	LU632_RS12480	0.21	-0.5
2,370,997	-	guaD	LU632_RS12480	0.22	-0.1
2,371,091	-	guaD	LU632_RS12480	0.29	+1.4
2,371,091	-	guaD	LU632_RS12480	0.29	+0.6
2,371,127	-	guaD	LU632_RS12480	0.32	-0.2
2,371,127	-	guaD	LU632_RS12480	0.32	+0.3
2,371,133	+	guaD	LU632_RS12480	0.33	+0.3
2,371,221	+	guaD	LU632_RS12480	0.40	+1.0
2,371,222	-	guaD	LU632_RS12480	0.40	-1.2
2,371,222	-	guaD	LU632_RS12480	0.40	+1.1
2,371,313	-	guaD	LU632_RS12480	0.47	+0.0
2,371,375	+	guaD	LU632_RS12480	0.52	+0.5
2,371,375	+	guaD	LU632_RS12480	0.52	+1.3
2,371,376	-	guaD	LU632_RS12480	0.52	+0.8
2,371,376	-	guaD	LU632_RS12480	0.52	+1.4
2,371,427	+	guaD	LU632_RS12480	0.57	+0.4
2,371,670	+	guaD	LU632_RS12480	0.76	-1.3
2,371,770	+	guaD	LU632_RS12480	0.85	-1.1
2,371,857	-				+0.1
2,371,883	-				+1.8
2,371,883	-				-1.2
2,372,461	+	tnpA	LU632_RS12485	0.83	-1.4
2,372,465	+	tnpA	LU632_RS12485	0.84	-1.2
2,372,465	+	tnpA	LU632_RS12485	0.84	+0.1
2,372,467	+	tnpA	LU632_RS12485	0.84	-0.4
2,372,520	-				-1.5
2,372,520	-				-2.2