Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12335

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,343,493	-	tus	LU632_RS12330	0.68	+0.4
2,343,705	+				+0.4
2,343,780	+				-0.0
2,343,813	-				-0.5
2,343,840	-				+0.8
2,343,992	+	fumC	LU632_RS12335	0.10	-0.3
2,344,004	+	fumC	LU632_RS12335	0.11	+2.5
2,344,005	-	fumC	LU632_RS12335	0.11	-1.4
2,344,015	-	fumC	LU632_RS12335	0.12	+0.1
2,344,131	+	fumC	LU632_RS12335	0.20	+1.5
2,344,205	+	fumC	LU632_RS12335	0.25	-0.5
2,344,289	+	fumC	LU632_RS12335	0.31	+0.2
2,344,289	+	fumC	LU632_RS12335	0.31	-0.4
2,344,373	+	fumC	LU632_RS12335	0.37	+0.4
2,344,377	+	fumC	LU632_RS12335	0.38	-1.0
2,344,377	+	fumC	LU632_RS12335	0.38	-0.3
2,344,426	-	fumC	LU632_RS12335	0.41	-0.5
2,344,426	-	fumC	LU632_RS12335	0.41	+0.1
2,344,426	-	fumC	LU632_RS12335	0.41	-1.9
2,344,464	-	fumC	LU632_RS12335	0.44	+1.2
2,344,607	+	fumC	LU632_RS12335	0.54	-0.1
2,344,808	+	fumC	LU632_RS12335	0.68	-0.7
2,344,808	+	fumC	LU632_RS12335	0.68	-0.5
2,344,809	-	fumC	LU632_RS12335	0.68	-2.4
2,344,829	+	fumC	LU632_RS12335	0.70	-0.2
2,344,849	-	fumC	LU632_RS12335	0.71	-1.0
2,344,896	+	fumC	LU632_RS12335	0.75	+0.9
2,344,934	+	fumC	LU632_RS12335	0.77	-0.3
2,344,934	+	fumC	LU632_RS12335	0.77	+0.9
2,344,934	+	fumC	LU632_RS12335	0.77	-0.4
2,345,031	-	fumC	LU632_RS12335	0.84	-1.6
2,345,059	-	fumC	LU632_RS12335	0.86	+0.5
2,345,064	+	fumC	LU632_RS12335	0.87	-0.7
2,345,081	+	fumC	LU632_RS12335	0.88	-0.5
2,345,081	+	fumC	LU632_RS12335	0.88	-0.4
2,345,082	-	fumC	LU632_RS12335	0.88	+1.3
2,345,241	-				-0.4
2,345,250	-				+0.8
2,345,263	+				+0.6
2,345,263	+				-0.5
2,345,266	-				-0.8
2,345,320	+				-1.3
2,345,357	+				-2.3
2,345,398	+				+0.1
2,345,431	+				-1.8
2,345,540	+				+0.2
2,345,550	+				+1.0
2,345,554	+				-1.5
2,345,620	+				+1.4
2,345,620	+				-0.8
2,345,634	-				+3.8
2,345,885	+				+2.2
2,345,920	+				+0.1
2,345,921	-				-1.0
2,346,032	-				+0.2
2,346,086	+				-2.4
2,346,086	+				-0.8
2,346,086	+				+0.7
2,346,087	-				+0.0
2,346,087	-				-2.3
2,346,088	+				-0.5
2,346,088	+				-0.1
2,346,089	-				-1.0
2,346,133	+				-0.2
2,346,134	-				+0.7
2,346,134	-				-0.2
2,346,235	-				+0.1
2,346,247	-				+0.5