Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11965

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,268,682	+		LU632_RS11960	0.35	-2.0
2,268,682	+		LU632_RS11960	0.35	-1.0
2,268,683	-		LU632_RS11960	0.35	-0.7
2,268,833	+		LU632_RS11960	0.45	-0.3
2,268,837	-		LU632_RS11960	0.46	-0.7
2,268,837	-		LU632_RS11960	0.46	+0.5
2,268,961	+		LU632_RS11960	0.55	+0.2
2,268,982	+		LU632_RS11960	0.56	-0.7
2,269,044	-		LU632_RS11960	0.61	-0.2
2,269,073	-		LU632_RS11960	0.63	-1.8
2,269,488	+				+0.8
2,269,489	-				+0.8
2,269,717	+				+1.2
2,269,717	+				-1.0
2,269,718	-				-0.2
2,269,718	-				-0.8
2,270,162	+		LU632_RS11965	0.37	-0.1
2,270,162	+		LU632_RS11965	0.37	-0.5
2,270,410	-		LU632_RS11965	0.54	-0.9
2,270,473	+		LU632_RS11965	0.58	-1.2
2,270,611	-		LU632_RS11965	0.68	-0.6
2,270,786	+		LU632_RS11965	0.79	-0.3
2,270,786	+		LU632_RS11965	0.79	-2.0
2,270,787	-		LU632_RS11965	0.79	-0.5
2,270,787	-		LU632_RS11965	0.79	-1.0
2,270,787	-		LU632_RS11965	0.79	+0.2
2,270,970	-				-0.8
2,271,021	+				-0.5
2,271,073	-				-1.5
2,271,091	+				-1.3
2,271,237	+				+0.5
2,271,257	-				-2.8
2,271,293	+				-1.2
2,271,293	+				+2.3
2,271,307	+				+0.6
2,271,308	-				-0.0
2,271,344	+				-0.8
2,271,344	+				-0.8
2,271,387	+				+1.5
2,271,395	+				-0.6
2,271,404	-				+0.7
2,271,404	-				+2.3
2,271,433	-				+0.5
2,271,463	+				-2.1
2,271,497	+				-1.0
2,271,497	+				+0.0
2,271,498	-				+0.6
2,271,498	-				-0.8
2,271,549	+				-1.6
2,271,556	+				+0.2
2,271,557	-				-1.0
2,271,558	+				+1.7
2,271,558	+				-0.4
2,271,558	+				-0.5
2,271,559	-				-0.7
2,271,559	-				-0.5
2,271,559	-				+2.8
2,271,559	-				-0.7
2,271,559	-				-0.3
2,271,563	+				-0.4
2,271,564	-				-0.8
2,271,569	-				-2.8
2,271,650	+				-0.6