Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11635

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,213,934	+				+0.2
2,213,954	-				+1.4
2,214,090	+				-0.1
2,214,195	-				-0.5
2,214,407	+		LU632_RS11625	0.85	-0.8
2,214,418	+		LU632_RS11625	0.89	-0.8
2,214,476	+				+0.5
2,214,513	-				-0.1
2,214,538	-				-0.3
2,216,145	+				-0.5
2,216,204	+		LU632_RS11640	0.19	+1.1
2,216,205	-		LU632_RS11640	0.20	-0.6
2,216,205	-		LU632_RS11640	0.20	+0.0
2,216,205	-		LU632_RS11640	0.20	+2.3
2,216,280	+		LU632_RS11640	0.59	-0.0
2,216,281	-		LU632_RS11640	0.60	-0.3
2,216,320	+		LU632_RS11640	0.80	-0.4
2,216,340	-				+0.7
2,216,364	+				-0.0
2,216,365	-				-1.1
2,216,365	-				+3.6
2,216,429	+				-1.9
2,216,430	-				-0.7
2,216,430	-				+1.4
2,216,554	-		LU632_RS11645	0.16	-2.0
2,216,616	-		LU632_RS11645	0.30	-0.4
2,216,689	+		LU632_RS11645	0.47	+0.2
2,216,689	+		LU632_RS11645	0.47	+0.2
2,216,689	+		LU632_RS11645	0.47	+3.4
2,216,689	+		LU632_RS11645	0.47	-1.8
2,216,690	-		LU632_RS11645	0.47	+1.7
2,216,690	-		LU632_RS11645	0.47	-0.4
2,216,690	-		LU632_RS11645	0.47	+0.3
2,216,690	-		LU632_RS11645	0.47	+0.3
2,216,690	-		LU632_RS11645	0.47	-2.0
2,216,691	+		LU632_RS11645	0.47	-1.2
2,216,691	+		LU632_RS11645	0.47	-0.8
2,216,691	+		LU632_RS11645	0.47	+0.1
2,216,691	+		LU632_RS11645	0.47	-0.8
2,216,691	+		LU632_RS11645	0.47	+1.7
2,216,691	+		LU632_RS11645	0.47	-0.0
2,216,691	+		LU632_RS11645	0.47	-0.9
2,216,691	+		LU632_RS11645	0.47	-0.8
2,216,691	+		LU632_RS11645	0.47	-0.5
2,216,691	+		LU632_RS11645	0.47	+1.4
2,216,691	+		LU632_RS11645	0.47	+0.2
2,216,692	-		LU632_RS11645	0.47	+1.2
2,216,692	-		LU632_RS11645	0.47	-1.4
2,216,692	-		LU632_RS11645	0.47	-0.3
2,216,692	-		LU632_RS11645	0.47	-0.6
2,216,692	-		LU632_RS11645	0.47	+1.2
2,216,693	+		LU632_RS11645	0.47	-1.4
2,216,701	-		LU632_RS11645	0.49	-0.4
2,216,765	+		LU632_RS11645	0.64	-0.9
2,216,817	-		LU632_RS11645	0.75	+1.4
2,216,882	+		LU632_RS11645	0.90	-0.6
2,217,001	-				+0.4
2,217,009	+				+0.5
2,217,010	-				-0.7
2,217,055	+				+0.8
2,217,056	-				+0.5
2,217,088	-				-0.4
2,217,101	-				-0.2
2,217,104	+				+0.7
2,217,104	+				+2.3
2,217,104	+				-2.8