Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11605

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,210,792	-		LU632_RS11595	0.40	+0.8
2,210,824	+		LU632_RS11595	0.48	-0.2
2,210,937	+		LU632_RS11595	0.75	-0.6
2,211,318	-		LU632_RS11600	0.60	-0.8
2,211,342	-		LU632_RS11600	0.66	+1.2
2,211,433	+		LU632_RS11600	0.88	-1.1
2,211,453	-				-0.8
2,211,455	+				-2.7
2,211,456	-				+0.2
2,211,456	-				+0.3
2,211,588	+				-0.9
2,211,592	+				+0.2
2,211,592	+				+0.8
2,211,883	+		LU632_RS11605	0.52	+0.5
2,211,884	-		LU632_RS11605	0.52	-1.2
2,211,896	+		LU632_RS11605	0.54	+0.3
2,211,897	-		LU632_RS11605	0.54	+0.0
2,211,898	+		LU632_RS11605	0.55	+0.6
2,211,898	+		LU632_RS11605	0.55	+0.3
2,211,898	+		LU632_RS11605	0.55	+0.7
2,211,899	-		LU632_RS11605	0.55	+0.8
2,211,900	+		LU632_RS11605	0.55	+0.3
2,211,901	-		LU632_RS11605	0.55	-1.5
2,211,997	+		LU632_RS11605	0.73	-0.1
2,211,998	-		LU632_RS11605	0.73	+1.4
2,212,096	-				-0.7
2,212,166	-				-0.6
2,212,187	+				-2.3
2,212,187	+				-1.0
2,212,191	+				+1.5
2,212,216	-				-0.3
2,212,217	+				-0.0
2,212,228	-				-0.4
2,212,228	-				-0.8
2,212,228	-				-1.5
2,212,228	-				+0.3
2,212,231	+				-0.5
2,212,231	+				-2.2
2,212,231	+				+0.7
2,212,242	+				+1.1
2,212,244	+				+0.1
2,212,244	+				+0.6
2,212,273	-				-0.7
2,212,416	-		LU632_RS11610	0.11	-3.2
2,212,779	+		LU632_RS11610	0.64	+0.7
2,212,790	+		LU632_RS11610	0.65	-0.7
2,212,790	+		LU632_RS11610	0.65	+1.6
2,212,791	-		LU632_RS11610	0.65	+0.6