Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10765

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,051,683	+	chaA	LU632_RS10760	0.61	+0.4
2,051,754	+	chaA	LU632_RS10760	0.68	-0.5
2,051,922	+	chaA	LU632_RS10760	0.83	+5.3
2,051,922	+	chaA	LU632_RS10760	0.83	+1.5
2,051,961	+	chaA	LU632_RS10760	0.87	+0.2
2,051,961	+	chaA	LU632_RS10760	0.87	+0.7
2,051,987	+	chaA	LU632_RS10760	0.89	+0.6
2,051,988	-	chaA	LU632_RS10760	0.89	-0.5
2,052,011	+				-0.2
2,052,011	+				-0.3
2,052,011	+				+0.4
2,052,011	+				-0.2
2,052,060	+				-0.6
2,052,061	-				-0.4
2,052,328	+				-0.4
2,052,353	-				-1.3
2,052,564	-				-0.0
2,052,602	+				-1.0
2,052,659	+				-1.1
2,052,659	+				-2.1
2,052,920	+		LU632_RS10765	0.38	+0.2
2,052,984	+		LU632_RS10765	0.48	+0.2
2,052,985	-		LU632_RS10765	0.48	+1.3
2,053,056	+		LU632_RS10765	0.58	-0.5
2,053,079	+		LU632_RS10765	0.62	-0.9
2,053,079	+		LU632_RS10765	0.62	+1.5
2,053,079	+		LU632_RS10765	0.62	-0.4
2,053,103	-		LU632_RS10765	0.65	-0.8
2,053,109	+		LU632_RS10765	0.66	-0.6
2,053,110	-		LU632_RS10765	0.66	+1.4
2,053,110	-		LU632_RS10765	0.66	+0.0
2,053,118	+		LU632_RS10765	0.67	-0.3
2,053,119	-		LU632_RS10765	0.67	-0.0
2,053,121	+		LU632_RS10765	0.68	+0.2
2,053,144	-		LU632_RS10765	0.71	+0.0
2,053,144	-		LU632_RS10765	0.71	-1.1
2,053,221	+		LU632_RS10765	0.82	+0.1
2,053,264	-		LU632_RS10765	0.89	+1.0
2,053,306	+				+0.4
2,053,307	-				-0.6
2,053,307	-				-2.8
2,053,319	+				-0.6
2,053,320	-				-0.8
2,053,364	+				+0.8
2,053,373	-				+0.0
2,053,676	+		LU632_RS10770	0.23	+1.5
2,053,676	+		LU632_RS10770	0.23	+0.3
2,053,676	+		LU632_RS10770	0.23	+1.8
2,053,677	-		LU632_RS10770	0.23	+0.6
2,053,677	-		LU632_RS10770	0.23	+1.0
2,053,677	-		LU632_RS10770	0.23	+1.0
2,053,677	-		LU632_RS10770	0.23	-0.5
2,053,695	-		LU632_RS10770	0.24	-0.2
2,053,695	-		LU632_RS10770	0.24	+0.5
2,053,775	-		LU632_RS10770	0.30	+0.8
2,053,793	+		LU632_RS10770	0.31	+1.8
2,054,060	+		LU632_RS10770	0.50	-0.2
2,054,060	+		LU632_RS10770	0.50	+0.8
2,054,060	+		LU632_RS10770	0.50	+0.2
2,054,061	-		LU632_RS10770	0.50	+3.1
2,054,061	-		LU632_RS10770	0.50	+0.2
2,054,061	-		LU632_RS10770	0.50	+0.8
2,054,061	-		LU632_RS10770	0.50	-0.3
2,054,079	+		LU632_RS10770	0.51	-0.5
2,054,079	+		LU632_RS10770	0.51	+0.5
2,054,083	+		LU632_RS10770	0.52	-0.4
2,054,083	+		LU632_RS10770	0.52	-1.5
2,054,084	-		LU632_RS10770	0.52	+0.1
2,054,124	+		LU632_RS10770	0.55	+0.8
2,054,125	-		LU632_RS10770	0.55	+3.0
2,054,125	-		LU632_RS10770	0.55	-1.0