Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10095

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,930,413	+	rlmI	LU632_RS10090	0.25	-0.2
1,930,414	-	rlmI	LU632_RS10090	0.25	-1.0
1,930,535	-	rlmI	LU632_RS10090	0.35	-0.9
1,930,557	+	rlmI	LU632_RS10090	0.37	+0.6
1,930,558	-	rlmI	LU632_RS10090	0.37	-2.4
1,930,568	-	rlmI	LU632_RS10090	0.38	+2.6
1,930,632	+	rlmI	LU632_RS10090	0.43	-0.7
1,930,639	-	rlmI	LU632_RS10090	0.44	+0.1
1,930,655	+	rlmI	LU632_RS10090	0.45	-0.5
1,930,656	-	rlmI	LU632_RS10090	0.45	+2.2
1,930,694	+	rlmI	LU632_RS10090	0.48	-0.6
1,930,694	+	rlmI	LU632_RS10090	0.48	-1.0
1,930,730	-	rlmI	LU632_RS10090	0.51	+1.3
1,930,962	+	rlmI	LU632_RS10090	0.71	-0.8
1,930,963	-	rlmI	LU632_RS10090	0.71	+0.9
1,931,007	+	rlmI	LU632_RS10090	0.75	+0.5
1,931,008	-	rlmI	LU632_RS10090	0.75	-0.3
1,931,062	-	rlmI	LU632_RS10090	0.79	+1.9
1,931,083	-	rlmI	LU632_RS10090	0.81	+0.2
1,931,166	+	rlmI	LU632_RS10090	0.88	-1.4
1,931,167	-	rlmI	LU632_RS10090	0.88	-0.8
1,931,212	-				+0.9
1,931,212	-				+0.7
1,931,307	+				+0.7
1,931,307	+				+0.1
1,931,314	+				+0.3
1,931,314	+				+0.0
1,931,320	+				-1.2
1,931,321	-				-0.8
1,931,321	-				-1.3
1,931,425	+	yccX	LU632_RS10095	0.11	+0.0
1,931,504	+	yccX	LU632_RS10095	0.39	+1.2
1,931,504	+	yccX	LU632_RS10095	0.39	-0.2
1,931,504	+	yccX	LU632_RS10095	0.39	+1.6
1,931,505	-	yccX	LU632_RS10095	0.40	+1.2
1,931,505	-	yccX	LU632_RS10095	0.40	+0.2
1,931,505	-	yccX	LU632_RS10095	0.40	-1.5
1,931,505	-	yccX	LU632_RS10095	0.40	+1.3
1,931,570	+	yccX	LU632_RS10095	0.63	+0.1
1,931,571	-	yccX	LU632_RS10095	0.63	+0.5
1,931,571	-	yccX	LU632_RS10095	0.63	+0.3
1,931,620	+	yccX	LU632_RS10095	0.81	-0.6
1,931,651	-				-0.3
1,931,662	+				-0.7
1,931,707	-				-0.3
1,931,707	-				-0.1
1,932,070	-				-0.4
1,932,213	+				+1.9
1,932,213	+				+1.7
1,932,213	+				+0.0
1,932,275	-	yccA	LU632_RS10105	0.17	-0.8
1,932,275	-	yccA	LU632_RS10105	0.17	-0.5
1,932,277	+	yccA	LU632_RS10105	0.18	-1.3
1,932,322	+	yccA	LU632_RS10105	0.25	+1.9
1,932,342	-	yccA	LU632_RS10105	0.28	+0.4
1,932,359	-	yccA	LU632_RS10105	0.30	-2.0
1,932,363	-	yccA	LU632_RS10105	0.31	-0.6
1,932,430	+	yccA	LU632_RS10105	0.41	+0.5
1,932,437	-	yccA	LU632_RS10105	0.42	+2.9
1,932,449	+	yccA	LU632_RS10105	0.44	+1.0
1,932,449	+	yccA	LU632_RS10105	0.44	-0.7
1,932,449	+	yccA	LU632_RS10105	0.44	+0.2
1,932,453	+	yccA	LU632_RS10105	0.44	-0.7
1,932,453	+	yccA	LU632_RS10105	0.44	+0.9
1,932,453	+	yccA	LU632_RS10105	0.44	+0.7
1,932,454	-	yccA	LU632_RS10105	0.45	-0.4
1,932,536	-	yccA	LU632_RS10105	0.57	-0.1
1,932,659	-	yccA	LU632_RS10105	0.76	+0.9
1,932,659	-	yccA	LU632_RS10105	0.76	+0.3