Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10065 and LU632_RS10070 are separated by 36 nucleotides LU632_RS10070 and LU632_RS10075 are separated by 196 nucleotides LU632_RS10075 and LU632_RS10080 are separated by 63 nucleotides LU632_RS10080 and hspQ are separated by 12 nucleotides hspQ and rlmI are separated by 58 nucleotides
LU632_RS10065: LU632_RS10065 - IS256 family transposase, at 1,926,925 to 1,928,133
_RS10065
LU632_RS10070: LU632_RS10070 - DUF2057 family protein, at 1,928,170 to 1,928,358
_RS10070
LU632_RS10075: LU632_RS10075 - IS1 family transposase, at 1,928,555 to 1,929,252
_RS10075
LU632_RS10080: LU632_RS10080 - CoA-binding protein, at 1,929,316 to 1,929,729
_RS10080
LU632_RS10085: hspQ - heat shock protein HspQ, at 1,929,742 to 1,930,058
hspQ
LU632_RS10090: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 1,930,117 to 1,931,307
rlmI
Position (kb) 1928
1929
1930 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1928.146 kb on + strand at 1928.156 kb on + strand at 1928.224 kb on + strand, within LU632_RS10070 at 1928.225 kb on - strand, within LU632_RS10070 at 1928.228 kb on - strand, within LU632_RS10070 at 1928.263 kb on + strand, within LU632_RS10070 at 1928.268 kb on + strand, within LU632_RS10070 at 1928.329 kb on - strand, within LU632_RS10070 at 1928.555 kb on - strand at 1928.555 kb on - strand at 1929.284 kb on - strand at 1929.313 kb on + strand at 1929.313 kb on + strand at 1929.313 kb on + strand at 1929.313 kb on + strand at 1929.339 kb on + strand at 1929.403 kb on + strand, within LU632_RS10080 at 1929.403 kb on + strand, within LU632_RS10080 at 1929.404 kb on - strand, within LU632_RS10080 at 1929.406 kb on - strand, within LU632_RS10080 at 1929.406 kb on - strand, within LU632_RS10080 at 1929.418 kb on + strand, within LU632_RS10080 at 1929.436 kb on + strand, within LU632_RS10080 at 1929.439 kb on - strand, within LU632_RS10080 at 1929.444 kb on - strand, within LU632_RS10080 at 1929.631 kb on - strand, within LU632_RS10080 at 1929.675 kb on + strand, within LU632_RS10080 at 1929.675 kb on + strand, within LU632_RS10080 at 1929.743 kb on + strand at 1929.766 kb on - strand at 1929.785 kb on + strand, within hspQ at 1929.785 kb on + strand, within hspQ at 1929.785 kb on + strand, within hspQ at 1929.859 kb on + strand, within hspQ at 1929.859 kb on + strand, within hspQ at 1929.864 kb on - strand, within hspQ at 1929.864 kb on - strand, within hspQ at 1929.864 kb on - strand, within hspQ at 1929.982 kb on - strand, within hspQ at 1930.016 kb on + strand, within hspQ at 1930.016 kb on + strand, within hspQ at 1930.078 kb on - strand at 1930.078 kb on - strand at 1930.148 kb on + strand at 1930.148 kb on + strand at 1930.150 kb on + strand at 1930.150 kb on + strand at 1930.151 kb on - strand at 1930.151 kb on - strand at 1930.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 1,928,146 + -0.1 1,928,156 + -0.4 1,928,224 + LU632_RS10070 0.29 -1.4 1,928,225 - LU632_RS10070 0.29 +3.2 1,928,228 - LU632_RS10070 0.31 +0.2 1,928,263 + LU632_RS10070 0.49 -0.0 1,928,268 + LU632_RS10070 0.52 +0.3 1,928,329 - LU632_RS10070 0.84 +0.8 1,928,555 - +0.5 1,928,555 - -0.3 1,929,284 - -0.0 1,929,313 + +0.3 1,929,313 + -1.2 1,929,313 + -0.3 1,929,313 + +1.2 1,929,339 + +0.1 1,929,403 + LU632_RS10080 0.21 -0.2 1,929,403 + LU632_RS10080 0.21 -0.3 1,929,404 - LU632_RS10080 0.21 -0.3 1,929,406 - LU632_RS10080 0.22 +1.7 1,929,406 - LU632_RS10080 0.22 +1.1 1,929,418 + LU632_RS10080 0.25 +0.3 1,929,436 + LU632_RS10080 0.29 -0.4 1,929,439 - LU632_RS10080 0.30 -0.0 1,929,444 - LU632_RS10080 0.31 +0.4 1,929,631 - LU632_RS10080 0.76 +0.7 1,929,675 + LU632_RS10080 0.87 +1.0 1,929,675 + LU632_RS10080 0.87 -0.6 1,929,743 + +0.9 1,929,766 - -1.0 1,929,785 + hspQ LU632_RS10085 0.14 -1.9 1,929,785 + hspQ LU632_RS10085 0.14 +0.6 1,929,785 + hspQ LU632_RS10085 0.14 +0.0 1,929,859 + hspQ LU632_RS10085 0.37 +0.1 1,929,859 + hspQ LU632_RS10085 0.37 -0.4 1,929,864 - hspQ LU632_RS10085 0.38 +0.6 1,929,864 - hspQ LU632_RS10085 0.38 +1.2 1,929,864 - hspQ LU632_RS10085 0.38 -0.8 1,929,982 - hspQ LU632_RS10085 0.76 -1.2 1,930,016 + hspQ LU632_RS10085 0.86 -0.3 1,930,016 + hspQ LU632_RS10085 0.86 +1.9 1,930,078 - -0.4 1,930,078 - -0.7 1,930,148 + -2.3 1,930,148 + +3.9 1,930,150 + -1.4 1,930,150 + -0.1 1,930,151 - -0.9 1,930,151 - +1.5 1,930,151 - +0.2
Or see this region's nucleotide sequence