Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10045

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,921,934	+				+0.7
1,921,937	+				-1.4
1,922,038	+				-1.9
1,922,039	-				-1.2
1,922,047	-				+0.1
1,922,061	+				-1.2
1,922,105	-				+1.9
1,922,126	-		LU632_RS10045	0.10	-0.0
1,922,136	+		LU632_RS10045	0.13	-1.0
1,922,137	-		LU632_RS10045	0.13	+0.3
1,922,141	-		LU632_RS10045	0.14	+2.2
1,922,242	+		LU632_RS10045	0.36	+0.1
1,922,243	-		LU632_RS10045	0.36	-1.1
1,922,243	-		LU632_RS10045	0.36	-0.9
1,922,243	-		LU632_RS10045	0.36	-0.7
1,922,243	-		LU632_RS10045	0.36	+0.1
1,922,285	-		LU632_RS10045	0.46	-0.5
1,922,289	+		LU632_RS10045	0.47	-1.1
1,922,290	-		LU632_RS10045	0.47	+0.3
1,922,367	+		LU632_RS10045	0.64	-1.5
1,922,526	+				-0.2
1,922,553	+				+0.9
1,922,554	-				-1.7
1,922,639	+				+0.9
1,922,639	+				+0.9
1,922,640	-				-1.1
1,922,685	-				-0.7
1,922,707	-				-1.3
1,922,763	+				-0.4
1,922,763	+				-0.4
1,922,763	+				+0.9
1,922,764	-				-1.1
1,922,764	-				-1.4
1,922,765	+				-0.1
1,922,765	+				-1.6
1,922,765	+				+1.1
1,922,765	+				-0.7
1,922,766	-				-0.7
1,922,948	+	helD	LU632_RS10050	0.14	+1.0
1,922,949	-	helD	LU632_RS10050	0.14	-0.9
1,922,951	-	helD	LU632_RS10050	0.14	-0.7
1,922,951	-	helD	LU632_RS10050	0.14	+1.1
1,923,008	+	helD	LU632_RS10050	0.17	-0.8
1,923,087	-	helD	LU632_RS10050	0.21	-0.7
1,923,177	-	helD	LU632_RS10050	0.25	-0.7
1,923,227	+	helD	LU632_RS10050	0.28	+2.5
1,923,248	+	helD	LU632_RS10050	0.29	+3.9
1,923,275	-	helD	LU632_RS10050	0.30	+0.9
1,923,403	-	helD	LU632_RS10050	0.36	+1.2