Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10035

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,919,052	-	yccS	LU632_RS10025	0.89	-0.7
1,919,052	-	yccS	LU632_RS10025	0.89	-0.1
1,919,101	+				-0.1
1,919,101	+				+1.3
1,919,102	-				-0.5
1,919,102	-				-0.5
1,919,142	+				-1.8
1,919,143	-				+0.9
1,919,143	-				+0.9
1,919,143	-				-0.2
1,919,144	+				-0.0
1,919,144	+				+0.3
1,919,144	+				+1.3
1,919,145	-				-2.3
1,919,145	-				-0.9
1,919,940	+				+0.1
1,919,979	+				-1.3
1,920,000	+				+0.5
1,920,001	-				+0.3
1,920,003	-				-1.3
1,920,020	+				+0.9
1,920,093	+		LU632_RS10035	0.18	-0.1
1,920,097	-		LU632_RS10035	0.18	-1.0
1,920,097	-		LU632_RS10035	0.18	+1.9
1,920,097	-		LU632_RS10035	0.18	+1.0
1,920,102	-		LU632_RS10035	0.19	+1.9
1,920,153	-		LU632_RS10035	0.26	-1.3
1,920,153	-		LU632_RS10035	0.26	-0.4
1,920,216	-		LU632_RS10035	0.35	-1.1
1,920,216	-		LU632_RS10035	0.35	+0.1
1,920,317	+		LU632_RS10035	0.48	-0.9
1,920,318	-		LU632_RS10035	0.49	-0.4
1,920,318	-		LU632_RS10035	0.49	-1.3
1,920,350	-		LU632_RS10035	0.53	-0.9
1,920,367	-		LU632_RS10035	0.55	-0.4
1,920,367	-		LU632_RS10035	0.55	+0.7
1,920,406	-		LU632_RS10035	0.61	-0.7
1,920,439	+		LU632_RS10035	0.65	-0.5
1,920,441	+		LU632_RS10035	0.66	-0.4
1,920,441	+		LU632_RS10035	0.66	-1.5
1,920,441	+		LU632_RS10035	0.66	-2.1
1,920,442	-		LU632_RS10035	0.66	+0.0
1,920,442	-		LU632_RS10035	0.66	-1.0
1,920,541	+		LU632_RS10035	0.79	+0.7
1,920,542	-		LU632_RS10035	0.79	-0.7
1,920,584	+		LU632_RS10035	0.85	+0.7
1,920,619	+				-0.9
1,920,623	+				-0.1
1,920,624	-				-0.4
1,920,671	+				+0.3
1,920,671	+				+1.9
1,920,672	-				+1.4
1,920,691	+				+0.8
1,920,691	+				-1.4
1,920,692	-				-0.6