Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sulA and LU632_RS10020 are separated by 202 nucleotides LU632_RS10020 and yccS overlap by 41 nucleotides yccS and LU632_RS10030 are separated by 14 nucleotides LU632_RS10030 and LU632_RS10035 are separated by 48 nucleotides
LU632_RS10015: sulA - cell division inhibitor SulA, at 1,916,571 to 1,917,080
sulA
LU632_RS10020: LU632_RS10020 - TfoX/Sxy family DNA transformation protein, at 1,917,283 to 1,917,921
_RS10020
LU632_RS10025: yccS - YccS family putative transporter, at 1,917,881 to 1,919,203
yccS
LU632_RS10030: LU632_RS10030 - IS1 family transposase, at 1,919,218 to 1,919,915
_RS10030
LU632_RS10035: LU632_RS10035 - YccS/YhfK family membrane protein, at 1,919,964 to 1,920,691
_RS10035
Position (kb) 1917
1918
1919
1920 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1916.911 kb on - strand, within sulA at 1916.947 kb on - strand, within sulA at 1916.947 kb on - strand, within sulA at 1916.982 kb on + strand, within sulA at 1916.983 kb on - strand, within sulA at 1917.023 kb on + strand, within sulA at 1917.024 kb on - strand, within sulA at 1917.024 kb on - strand, within sulA at 1917.024 kb on - strand, within sulA at 1917.200 kb on + strand at 1917.200 kb on + strand at 1917.201 kb on - strand at 1917.262 kb on + strand at 1917.396 kb on - strand, within LU632_RS10020 at 1917.455 kb on - strand, within LU632_RS10020 at 1917.456 kb on + strand, within LU632_RS10020 at 1917.457 kb on - strand, within LU632_RS10020 at 1917.457 kb on - strand, within LU632_RS10020 at 1917.459 kb on + strand, within LU632_RS10020 at 1917.520 kb on + strand, within LU632_RS10020 at 1917.564 kb on - strand, within LU632_RS10020 at 1917.564 kb on - strand, within LU632_RS10020 at 1917.599 kb on + strand, within LU632_RS10020 at 1917.600 kb on - strand, within LU632_RS10020 at 1917.756 kb on + strand, within LU632_RS10020 at 1917.774 kb on + strand, within LU632_RS10020 at 1917.782 kb on + strand, within LU632_RS10020 at 1917.783 kb on - strand, within LU632_RS10020 at 1917.827 kb on + strand, within LU632_RS10020 at 1917.919 kb on + strand at 1917.941 kb on + strand at 1918.101 kb on + strand, within yccS at 1918.101 kb on + strand, within yccS at 1918.101 kb on + strand, within yccS at 1918.101 kb on + strand, within yccS at 1918.105 kb on + strand, within yccS at 1918.106 kb on - strand, within yccS at 1918.178 kb on - strand, within yccS at 1918.179 kb on + strand, within yccS at 1918.179 kb on + strand, within yccS at 1918.179 kb on + strand, within yccS at 1918.180 kb on - strand, within yccS at 1918.180 kb on - strand, within yccS at 1918.206 kb on - strand, within yccS at 1918.206 kb on - strand, within yccS at 1918.228 kb on + strand, within yccS at 1918.229 kb on - strand, within yccS at 1918.229 kb on - strand, within yccS at 1918.342 kb on + strand, within yccS at 1918.388 kb on - strand, within yccS at 1918.406 kb on - strand, within yccS at 1918.499 kb on - strand, within yccS at 1918.499 kb on - strand, within yccS at 1918.499 kb on - strand, within yccS at 1918.547 kb on + strand, within yccS at 1918.562 kb on - strand, within yccS at 1918.613 kb on + strand, within yccS at 1918.625 kb on + strand, within yccS at 1918.631 kb on + strand, within yccS at 1918.667 kb on + strand, within yccS at 1918.688 kb on - strand, within yccS at 1918.688 kb on - strand, within yccS at 1918.691 kb on - strand, within yccS at 1918.709 kb on + strand, within yccS at 1918.711 kb on + strand, within yccS at 1918.806 kb on - strand, within yccS at 1918.835 kb on + strand, within yccS at 1918.851 kb on - strand, within yccS at 1918.866 kb on - strand, within yccS at 1918.901 kb on + strand, within yccS at 1918.902 kb on - strand, within yccS at 1919.052 kb on - strand, within yccS at 1919.052 kb on - strand, within yccS at 1919.101 kb on + strand at 1919.101 kb on + strand at 1919.102 kb on - strand at 1919.102 kb on - strand at 1919.142 kb on + strand at 1919.143 kb on - strand at 1919.143 kb on - strand at 1919.143 kb on - strand at 1919.144 kb on + strand at 1919.144 kb on + strand at 1919.144 kb on + strand at 1919.145 kb on - strand at 1919.145 kb on - strand at 1919.940 kb on + strand at 1919.979 kb on + strand at 1920.000 kb on + strand at 1920.001 kb on - strand at 1920.003 kb on - strand at 1920.020 kb on + strand at 1920.093 kb on + strand, within LU632_RS10035 at 1920.097 kb on - strand, within LU632_RS10035 at 1920.097 kb on - strand, within LU632_RS10035 at 1920.097 kb on - strand, within LU632_RS10035 at 1920.102 kb on - strand, within LU632_RS10035 at 1920.153 kb on - strand, within LU632_RS10035 at 1920.153 kb on - strand, within LU632_RS10035
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 1,916,911 - sulA LU632_RS10015 0.67 -1.1 1,916,947 - sulA LU632_RS10015 0.74 +1.3 1,916,947 - sulA LU632_RS10015 0.74 +0.2 1,916,982 + sulA LU632_RS10015 0.81 +2.8 1,916,983 - sulA LU632_RS10015 0.81 -0.4 1,917,023 + sulA LU632_RS10015 0.89 -0.4 1,917,024 - sulA LU632_RS10015 0.89 -0.7 1,917,024 - sulA LU632_RS10015 0.89 -0.9 1,917,024 - sulA LU632_RS10015 0.89 -0.4 1,917,200 + +0.4 1,917,200 + -1.3 1,917,201 - +0.7 1,917,262 + +1.5 1,917,396 - LU632_RS10020 0.18 +2.8 1,917,455 - LU632_RS10020 0.27 +0.1 1,917,456 + LU632_RS10020 0.27 -0.6 1,917,457 - LU632_RS10020 0.27 +0.4 1,917,457 - LU632_RS10020 0.27 -0.3 1,917,459 + LU632_RS10020 0.28 -0.0 1,917,520 + LU632_RS10020 0.37 +0.8 1,917,564 - LU632_RS10020 0.44 -0.4 1,917,564 - LU632_RS10020 0.44 -1.9 1,917,599 + LU632_RS10020 0.49 +0.8 1,917,600 - LU632_RS10020 0.50 -3.3 1,917,756 + LU632_RS10020 0.74 +0.3 1,917,774 + LU632_RS10020 0.77 +2.1 1,917,782 + LU632_RS10020 0.78 +1.3 1,917,783 - LU632_RS10020 0.78 -1.5 1,917,827 + LU632_RS10020 0.85 +0.3 1,917,919 + +0.2 1,917,941 + +2.0 1,918,101 + yccS LU632_RS10025 0.17 +1.7 1,918,101 + yccS LU632_RS10025 0.17 +0.3 1,918,101 + yccS LU632_RS10025 0.17 -0.4 1,918,101 + yccS LU632_RS10025 0.17 -0.7 1,918,105 + yccS LU632_RS10025 0.17 -0.1 1,918,106 - yccS LU632_RS10025 0.17 +1.0 1,918,178 - yccS LU632_RS10025 0.22 -0.1 1,918,179 + yccS LU632_RS10025 0.23 +1.3 1,918,179 + yccS LU632_RS10025 0.23 -0.0 1,918,179 + yccS LU632_RS10025 0.23 -0.4 1,918,180 - yccS LU632_RS10025 0.23 -1.1 1,918,180 - yccS LU632_RS10025 0.23 +0.3 1,918,206 - yccS LU632_RS10025 0.25 -2.8 1,918,206 - yccS LU632_RS10025 0.25 +0.9 1,918,228 + yccS LU632_RS10025 0.26 -1.0 1,918,229 - yccS LU632_RS10025 0.26 +2.5 1,918,229 - yccS LU632_RS10025 0.26 -1.0 1,918,342 + yccS LU632_RS10025 0.35 +0.5 1,918,388 - yccS LU632_RS10025 0.38 -0.7 1,918,406 - yccS LU632_RS10025 0.40 +0.6 1,918,499 - yccS LU632_RS10025 0.47 -1.3 1,918,499 - yccS LU632_RS10025 0.47 +0.2 1,918,499 - yccS LU632_RS10025 0.47 +0.9 1,918,547 + yccS LU632_RS10025 0.50 -1.1 1,918,562 - yccS LU632_RS10025 0.51 +1.0 1,918,613 + yccS LU632_RS10025 0.55 +0.9 1,918,625 + yccS LU632_RS10025 0.56 +0.0 1,918,631 + yccS LU632_RS10025 0.57 -0.5 1,918,667 + yccS LU632_RS10025 0.59 +2.2 1,918,688 - yccS LU632_RS10025 0.61 +0.2 1,918,688 - yccS LU632_RS10025 0.61 +0.6 1,918,691 - yccS LU632_RS10025 0.61 +0.3 1,918,709 + yccS LU632_RS10025 0.63 -0.1 1,918,711 + yccS LU632_RS10025 0.63 +0.3 1,918,806 - yccS LU632_RS10025 0.70 +0.9 1,918,835 + yccS LU632_RS10025 0.72 -0.6 1,918,851 - yccS LU632_RS10025 0.73 -0.5 1,918,866 - yccS LU632_RS10025 0.74 -0.4 1,918,901 + yccS LU632_RS10025 0.77 -1.0 1,918,902 - yccS LU632_RS10025 0.77 -1.2 1,919,052 - yccS LU632_RS10025 0.89 -0.7 1,919,052 - yccS LU632_RS10025 0.89 -0.1 1,919,101 + -0.1 1,919,101 + +1.3 1,919,102 - -0.5 1,919,102 - -0.5 1,919,142 + -1.8 1,919,143 - +0.9 1,919,143 - +0.9 1,919,143 - -0.2 1,919,144 + -0.0 1,919,144 + +0.3 1,919,144 + +1.3 1,919,145 - -2.3 1,919,145 - -0.9 1,919,940 + +0.1 1,919,979 + -1.3 1,920,000 + +0.5 1,920,001 - +0.3 1,920,003 - -1.3 1,920,020 + +0.9 1,920,093 + LU632_RS10035 0.18 -0.1 1,920,097 - LU632_RS10035 0.18 -1.0 1,920,097 - LU632_RS10035 0.18 +1.9 1,920,097 - LU632_RS10035 0.18 +1.0 1,920,102 - LU632_RS10035 0.19 +1.9 1,920,153 - LU632_RS10035 0.26 -1.3 1,920,153 - LU632_RS10035 0.26 -0.4
Or see this region's nucleotide sequence