Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09715

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,840,444	+	clpA	LU632_RS09705	0.85	+0.2
1,840,445	-	clpA	LU632_RS09705	0.85	-1.0
1,840,447	-	clpA	LU632_RS09705	0.85	-1.7
1,840,447	-	clpA	LU632_RS09705	0.85	-0.4
1,840,447	-	clpA	LU632_RS09705	0.85	-1.0
1,840,447	-	clpA	LU632_RS09705	0.85	+1.0
1,840,496	-	clpA	LU632_RS09705	0.87	-1.4
1,840,680	+				+0.4
1,840,681	-				-2.6
1,840,737	-				-1.2
1,840,737	-				+0.1
1,840,737	-				-0.0
1,840,775	-				-0.9
1,840,784	+				-2.1
1,840,785	-				-0.2
1,840,837	-				-1.0
1,840,841	+				+0.1
1,840,841	+				-0.2
1,841,232	+				-1.0
1,841,322	-				-0.0
1,841,390	+				+1.0
1,841,390	+				-1.7
1,841,390	+				-0.7
1,841,390	+				-0.5
1,841,391	-				-1.7
1,841,391	-				-2.4
1,841,391	-				-0.0
1,841,430	-				+3.2
1,841,430	-				-0.4
1,841,524	+	aat	LU632_RS09715	0.13	-0.6
1,841,550	+	aat	LU632_RS09715	0.16	+1.2
1,841,550	+	aat	LU632_RS09715	0.16	+1.0
1,841,563	+	aat	LU632_RS09715	0.18	-0.4
1,841,563	+	aat	LU632_RS09715	0.18	-0.6
1,841,564	-	aat	LU632_RS09715	0.18	-0.6
1,841,697	-	aat	LU632_RS09715	0.38	-0.7
1,841,697	-	aat	LU632_RS09715	0.38	-0.0
1,841,782	-	aat	LU632_RS09715	0.50	-0.3
1,841,802	+	aat	LU632_RS09715	0.53	-1.7
1,842,014	-	aat	LU632_RS09715	0.83	-1.9
1,842,043	+	aat	LU632_RS09715	0.87	+1.0
1,842,163	+				+0.7
1,842,163	+				-0.6
1,842,165	+				+1.0