Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09535

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,803,923	-		LU632_RS09525	0.73	-1.4
1,804,056	+		LU632_RS09525	0.81	-0.1
1,804,059	+		LU632_RS09525	0.81	+0.4
1,804,158	+		LU632_RS09525	0.88	+1.7
1,804,214	-				+0.9
1,804,222	-				-0.1
1,804,222	-				+0.3
1,804,317	+				+0.4
1,804,322	-				+0.5
1,804,435	+				-0.6
1,804,472	-				-0.0
1,804,526	-				-0.6
1,804,583	+		LU632_RS09530	0.25	-0.7
1,804,603	-		LU632_RS09530	0.34	-0.9
1,804,608	+		LU632_RS09530	0.36	+0.3
1,804,665	+		LU632_RS09530	0.62	+0.9
1,804,666	-		LU632_RS09530	0.63	-0.2
1,804,679	+		LU632_RS09530	0.69	+1.8
1,804,680	-		LU632_RS09530	0.69	-0.7
1,804,680	-		LU632_RS09530	0.69	+1.4
1,804,723	+		LU632_RS09530	0.89	-1.4
1,804,724	-				-0.7
1,804,724	-				+0.3
1,804,724	-				+1.1
1,804,828	+				-1.7
1,804,828	+				-1.7
1,804,888	+				+1.5
1,804,888	+				-0.3
1,804,889	-				+3.4
1,804,889	-				+2.5
1,804,892	+				-1.4
1,804,893	-				-0.1
1,804,975	+		LU632_RS09535	0.11	+0.7
1,805,126	+		LU632_RS09535	0.31	-0.3
1,805,237	+		LU632_RS09535	0.46	-0.2
1,805,237	+		LU632_RS09535	0.46	-0.3
1,805,238	-		LU632_RS09535	0.46	-0.0
1,805,261	+		LU632_RS09535	0.49	+0.8
1,805,304	-		LU632_RS09535	0.54	-0.4
1,805,414	+		LU632_RS09535	0.69	-1.5
1,805,506	+		LU632_RS09535	0.81	-0.9
1,805,507	-		LU632_RS09535	0.81	+0.1
1,805,564	+		LU632_RS09535	0.88	+0.4
1,805,565	-		LU632_RS09535	0.88	+0.3
1,805,618	-				-0.5
1,805,625	+				+1.6
1,805,625	+				+0.1
1,805,625	+				+1.1
1,805,626	-				+0.5
1,805,657	+				+0.5
1,805,658	-				-1.7
1,805,737	+				-1.2
1,805,742	+				-0.1
1,805,799	+	moeA	LU632_RS09540	0.12	-1.1
1,805,947	+	moeA	LU632_RS09540	0.23	-0.8
1,805,966	+	moeA	LU632_RS09540	0.25	-1.1
1,805,967	-	moeA	LU632_RS09540	0.25	+0.1
1,806,113	+	moeA	LU632_RS09540	0.37	-0.0
1,806,114	-	moeA	LU632_RS09540	0.37	-0.3
1,806,114	-	moeA	LU632_RS09540	0.37	-2.0
1,806,282	+	moeA	LU632_RS09540	0.51	-0.3
1,806,283	-	moeA	LU632_RS09540	0.51	+0.1
1,806,514	+	moeA	LU632_RS09540	0.69	+0.7
1,806,514	+	moeA	LU632_RS09540	0.69	-0.6
1,806,606	+	moeA	LU632_RS09540	0.77	-2.4