Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09305

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,757,847	-		LU632_RS09295	0.85	+0.1
1,757,912	-				-1.4
1,758,039	+				+0.5
1,758,040	-				+0.9
1,758,047	+				-0.1
1,758,066	-				-0.1
1,758,095	+				-1.7
1,758,095	+				+0.2
1,758,095	+				-0.0
1,758,158	+	upp	LU632_RS09300	0.18	-0.6
1,758,395	-	upp	LU632_RS09300	0.53	-0.4
1,758,519	+	upp	LU632_RS09300	0.72	+1.5
1,758,606	+	upp	LU632_RS09300	0.85	-0.5
1,758,606	+	upp	LU632_RS09300	0.85	+2.5
1,758,606	+	upp	LU632_RS09300	0.85	+0.4
1,758,607	-	upp	LU632_RS09300	0.85	+0.5
1,758,636	+	upp	LU632_RS09300	0.89	+0.5
1,758,731	-				+0.6
1,758,763	+				+0.7
1,758,763	+				+1.1
1,758,767	+				+0.2
1,758,767	+				-1.2
1,758,768	-				+1.4
1,758,768	-				-0.7
1,758,768	-				+0.1
1,758,768	-				-1.0
1,758,768	-				-0.8
1,758,768	-				-1.4
1,758,769	+				-0.5
1,758,769	+				-0.5
1,758,770	-				-2.3
1,758,844	+		LU632_RS09305	0.17	-0.5
1,758,916	+		LU632_RS09305	0.25	+1.2
1,758,916	+		LU632_RS09305	0.25	-0.8
1,759,018	-		LU632_RS09305	0.37	-0.0
1,759,040	+		LU632_RS09305	0.40	+0.4
1,759,160	-		LU632_RS09305	0.54	-1.2
1,759,216	+		LU632_RS09305	0.60	-0.2
1,759,216	+		LU632_RS09305	0.60	-2.4
1,759,216	+		LU632_RS09305	0.60	-0.3
1,759,263	+		LU632_RS09305	0.66	-0.7
1,759,370	+		LU632_RS09305	0.78	+1.0
1,759,455	+		LU632_RS09305	0.88	-1.2
1,759,455	+		LU632_RS09305	0.88	+0.8
1,759,463	+		LU632_RS09305	0.89	-0.9
1,759,464	-		LU632_RS09305	0.89	-1.1
1,759,465	+		LU632_RS09305	0.89	-1.5
1,759,466	-		LU632_RS09305	0.89	+1.0
1,759,466	-		LU632_RS09305	0.89	-0.9
1,759,606	+				+0.3
1,759,607	-				+1.1
1,759,607	-				-0.8
1,759,669	+				-0.1
1,759,670	-				-1.1
1,759,670	-				-1.1
1,759,670	-				+0.9
1,759,718	+				-0.7
1,759,719	-				-0.9
1,759,722	+				-0.2
1,759,784	+				-0.9
1,759,789	+				-0.2
1,759,789	+				+0.4
1,759,790	-				-1.5
1,759,790	-				-0.2
1,759,806	+				-0.1
1,759,866	-				-1.7
1,759,866	-				+0.7
1,759,926	+				+0.1
1,760,098	+		LU632_RS09310	0.36	+0.5
1,760,129	-		LU632_RS09310	0.45	-0.2
1,760,129	-		LU632_RS09310	0.45	-1.1
1,760,144	+		LU632_RS09310	0.49	+1.1
1,760,144	+		LU632_RS09310	0.49	+3.5
1,760,145	-		LU632_RS09310	0.50	-0.4
1,760,145	-		LU632_RS09310	0.50	+0.3
1,760,235	-		LU632_RS09310	0.75	-0.9
1,760,250	+		LU632_RS09310	0.79	+2.1
1,760,250	+		LU632_RS09310	0.79	+0.1
1,760,251	-		LU632_RS09310	0.80	+1.1