Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08965

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,690,895	-				+0.2
1,690,913	+				+0.5
1,691,154	+		LU632_RS08960	0.27	+0.3
1,691,155	-		LU632_RS08960	0.27	+0.3
1,691,279	+		LU632_RS08960	0.42	-0.7
1,691,523	+		LU632_RS08960	0.72	+0.5
1,691,525	+		LU632_RS08960	0.72	+1.4
1,691,563	+		LU632_RS08960	0.76	-1.7
1,691,572	-		LU632_RS08960	0.77	+0.0
1,691,572	-		LU632_RS08960	0.77	+2.3
1,691,605	+		LU632_RS08960	0.81	+0.9
1,691,700	-				+1.1
1,691,700	-				-2.1
1,691,867	-				+0.5
1,691,934	+		LU632_RS08965	0.16	+0.5
1,691,986	+		LU632_RS08965	0.31	-0.4
1,691,986	+		LU632_RS08965	0.31	-0.2
1,691,987	-		LU632_RS08965	0.31	-0.1
1,691,987	-		LU632_RS08965	0.31	-2.8
1,691,987	-		LU632_RS08965	0.31	-0.0
1,692,034	-		LU632_RS08965	0.44	-0.2
1,692,045	+		LU632_RS08965	0.48	-0.0
1,692,045	+		LU632_RS08965	0.48	-2.4
1,692,046	-		LU632_RS08965	0.48	-0.6
1,692,046	-		LU632_RS08965	0.48	-0.5
1,692,275	+		LU632_RS08970	0.10	+0.7
1,692,275	+		LU632_RS08970	0.10	+0.8
1,692,498	+		LU632_RS08970	0.60	+0.1
1,692,608	+		LU632_RS08970	0.84	-1.5
1,692,608	+		LU632_RS08970	0.84	+1.5
1,692,608	+		LU632_RS08970	0.84	-0.8
1,692,609	-		LU632_RS08970	0.85	+3.2
1,692,643	+				+0.8
1,692,663	-				-0.1
1,692,663	-				-1.7
1,692,683	-				-0.9
1,692,703	+				+0.0
1,692,703	+				-1.2
1,692,775	-				-0.5
1,692,783	-				-0.9
1,692,829	+				+0.8
1,692,830	-				+0.5
1,692,901	+		LU632_RS08975	0.21	-1.4
1,692,947	+		LU632_RS08975	0.50	+1.2
1,692,948	-		LU632_RS08975	0.51	-0.8
1,692,948	-		LU632_RS08975	0.51	-2.1
1,692,973	+		LU632_RS08975	0.67	-0.8
1,692,985	-		LU632_RS08975	0.74	-1.3
1,693,134	-				-0.7
1,693,136	+				+0.3
1,693,148	-				-0.6
1,693,204	-				-0.3