Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08465

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,586,618	+		LU632_RS08460	0.42	-0.5
1,586,619	-		LU632_RS08460	0.42	+2.1
1,586,619	-		LU632_RS08460	0.42	-1.9
1,586,619	-		LU632_RS08460	0.42	-2.3
1,586,708	+		LU632_RS08460	0.49	+1.7
1,586,708	+		LU632_RS08460	0.49	+0.1
1,586,709	-		LU632_RS08460	0.49	+0.5
1,586,709	-		LU632_RS08460	0.49	+1.1
1,586,709	-		LU632_RS08460	0.49	-0.7
1,586,755	+		LU632_RS08460	0.52	-0.8
1,586,755	+		LU632_RS08460	0.52	-0.8
1,586,756	-		LU632_RS08460	0.52	-0.6
1,586,759	+		LU632_RS08460	0.52	-0.2
1,586,803	+		LU632_RS08460	0.55	-0.9
1,586,803	+		LU632_RS08460	0.55	-0.1
1,586,975	-		LU632_RS08460	0.67	-3.4
1,587,114	-		LU632_RS08460	0.77	-0.9
1,587,241	+		LU632_RS08460	0.86	+0.1
1,587,281	-		LU632_RS08460	0.88	-0.7
1,587,295	+		LU632_RS08460	0.89	+1.4
1,587,295	+		LU632_RS08460	0.89	-0.5
1,587,296	-		LU632_RS08460	0.89	-2.1
1,587,296	-		LU632_RS08460	0.89	-1.1
1,587,296	-		LU632_RS08460	0.89	-0.2
1,587,296	-		LU632_RS08460	0.89	-0.8
1,587,416	+				-1.5
1,587,479	+				-1.0
1,587,486	-				-0.0
1,587,541	+				+0.2
1,587,542	-				+1.1
1,587,767	+		LU632_RS08465	0.21	-0.2
1,587,805	+		LU632_RS08465	0.24	+0.3
1,587,949	+		LU632_RS08465	0.37	+0.5
1,587,949	+		LU632_RS08465	0.37	-0.3
1,587,949	+		LU632_RS08465	0.37	-0.5
1,587,949	+		LU632_RS08465	0.37	+1.1
1,587,949	+		LU632_RS08465	0.37	-2.0
1,587,949	+		LU632_RS08465	0.37	+0.5
1,587,950	-		LU632_RS08465	0.37	-1.3
1,587,950	-		LU632_RS08465	0.37	-0.1
1,587,950	-		LU632_RS08465	0.37	-1.8
1,587,954	-		LU632_RS08465	0.37	-1.5
1,587,954	-		LU632_RS08465	0.37	-0.9
1,588,033	-		LU632_RS08465	0.44	+0.5
1,588,063	+		LU632_RS08465	0.47	+0.5
1,588,064	-		LU632_RS08465	0.47	+2.4
1,588,064	-		LU632_RS08465	0.47	+1.4
1,588,084	+		LU632_RS08465	0.49	+2.1
1,588,084	+		LU632_RS08465	0.49	-1.3
1,588,084	+		LU632_RS08465	0.49	-0.9
1,588,085	-		LU632_RS08465	0.49	+1.4
1,588,091	+		LU632_RS08465	0.49	+0.8
1,588,767	-				-0.7
1,588,767	-				-0.9
1,588,767	-				-2.6
1,588,792	+				-0.3
1,588,792	+				-0.1
1,588,793	-				+1.3
1,588,793	-				+0.4
1,588,793	-				-0.7
1,588,794	+				-1.7
1,588,919	+				+1.1
1,588,919	+				-1.0
1,588,919	+				-1.3
1,588,931	-				-1.5
1,588,931	-				+0.1
1,589,041	+		LU632_RS08470	0.13	-1.0
1,589,048	-		LU632_RS08470	0.13	+0.5
1,589,121	+		LU632_RS08470	0.18	+0.1
1,589,122	-		LU632_RS08470	0.18	+0.5
1,589,158	+		LU632_RS08470	0.21	-0.7
1,589,158	+		LU632_RS08470	0.21	+0.1
1,589,357	+		LU632_RS08470	0.35	-0.8
1,589,357	+		LU632_RS08470	0.35	-0.4
1,589,358	-		LU632_RS08470	0.35	-0.5
1,589,382	-		LU632_RS08470	0.36	-1.2
1,589,485	+		LU632_RS08470	0.43	-0.1
1,589,486	-		LU632_RS08470	0.43	-1.7
1,589,486	-		LU632_RS08470	0.43	+0.4
1,589,528	+		LU632_RS08470	0.46	+0.1
1,589,571	+		LU632_RS08470	0.49	+0.4
1,589,593	+		LU632_RS08470	0.51	-0.3
1,589,593	+		LU632_RS08470	0.51	-0.9
1,589,652	+		LU632_RS08470	0.55	-1.0
1,589,656	+		LU632_RS08470	0.55	+2.1
1,589,664	+		LU632_RS08470	0.56	-0.2