Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07250

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,370,354	-				+0.8
1,370,354	-				+0.2
1,370,616	+		LU632_RS07240	0.57	+0.6
1,370,616	+		LU632_RS07240	0.57	-0.7
1,370,675	+		LU632_RS07240	0.73	+0.3
1,370,676	-		LU632_RS07240	0.73	-2.0
1,370,676	-		LU632_RS07240	0.73	+2.3
1,370,676	-		LU632_RS07240	0.73	+1.0
1,370,676	-		LU632_RS07240	0.73	+0.3
1,370,676	-		LU632_RS07240	0.73	+0.2
1,370,676	-		LU632_RS07240	0.73	+1.5
1,370,855	+		LU632_RS07245	0.18	+1.9
1,370,855	+		LU632_RS07245	0.18	+0.0
1,370,855	+		LU632_RS07245	0.18	+0.9
1,370,876	+		LU632_RS07245	0.22	+1.4
1,370,900	+		LU632_RS07245	0.27	+0.6
1,370,913	-		LU632_RS07245	0.30	+0.5
1,370,936	+		LU632_RS07245	0.35	-1.0
1,370,936	+		LU632_RS07245	0.35	+1.7
1,370,936	+		LU632_RS07245	0.35	-1.2
1,371,079	+		LU632_RS07245	0.65	+0.5
1,371,080	-		LU632_RS07245	0.65	+0.8
1,371,080	-		LU632_RS07245	0.65	-1.1
1,371,083	+		LU632_RS07245	0.65	+1.5
1,371,175	-		LU632_RS07245	0.85	-1.2
1,371,175	-		LU632_RS07245	0.85	-0.8
1,371,185	+		LU632_RS07245	0.87	+2.8
1,371,186	-		LU632_RS07245	0.87	-1.4
1,371,186	-		LU632_RS07245	0.87	+0.1
1,371,264	+				-1.2
1,371,265	-				-0.1
1,371,809	+				-0.5
1,371,810	-				+0.5
1,371,833	+				+0.3
1,371,833	+				+1.5
1,371,833	+				+0.5
1,371,833	+				-0.4
1,371,834	-				-1.5
1,371,834	-				-0.6
1,371,834	-				+0.1
1,371,834	-				-0.2
1,371,924	-		LU632_RS07255	0.19	+0.5
1,371,959	+		LU632_RS07255	0.30	-1.6
1,372,002	-		LU632_RS07255	0.44	-0.3
1,372,002	-		LU632_RS07255	0.44	-0.2
1,372,117	+		LU632_RS07255	0.81	-0.3
1,372,146	+				-1.1
1,372,146	+				+1.5
1,372,146	+				+0.1
1,372,147	-				-0.2
1,372,150	+				+2.1
1,372,150	+				-0.2
1,372,150	+				-0.8
1,372,151	-				+1.5
1,372,151	-				-0.2
1,372,151	-				-2.3
1,372,151	-				-0.9
1,372,151	-				+0.8
1,372,151	-				-0.5
1,372,151	-				-0.9
1,372,151	-				+1.1
1,372,151	-				+3.1
1,372,168	+				+0.0
1,372,169	-				-0.7
1,372,169	-				+0.3
1,372,194	+				+1.2
1,372,229	+				-1.0
1,372,310	-				+1.3
1,372,355	+				+0.6
1,372,415	+				-0.0
1,372,415	+				+0.7
1,372,415	+				+1.0
1,372,418	+				-0.7
1,372,418	+				+0.7
1,372,426	-				-0.1
1,372,437	-				-0.9
1,372,485	+		LU632_RS07260	0.27	-1.4
1,372,485	+		LU632_RS07260	0.27	-2.2
1,372,486	-		LU632_RS07260	0.28	+0.9
1,372,488	-		LU632_RS07260	0.29	-0.9
1,372,488	-		LU632_RS07260	0.29	+1.3