Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07225

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,366,657	+				+0.1
1,366,680	-				-0.2
1,366,961	+		LU632_RS07215	0.50	+0.0
1,366,961	+		LU632_RS07215	0.50	+0.4
1,366,961	+		LU632_RS07215	0.50	-0.2
1,366,965	-		LU632_RS07215	0.51	+1.8
1,367,065	+		LU632_RS07215	0.73	+0.1
1,367,189	-				+0.4
1,367,189	-				+0.3
1,367,358	-		LU632_RS07220	0.41	+2.2
1,367,456	+		LU632_RS07220	0.84	-1.2
1,367,457	-		LU632_RS07220	0.85	-0.6
1,367,481	-				-2.1
1,367,493	+				+0.1
1,367,538	+				+0.6
1,367,539	-				-0.3
1,367,547	+				+2.3
1,367,548	-				-2.2
1,367,570	-				-0.3
1,367,572	+				+0.3
1,367,601	+				+1.6
1,367,602	-				-1.3
1,367,602	-				+0.4
1,367,631	+				-2.6
1,367,632	-				-1.0
1,367,645	-				-0.2
1,367,649	+				-0.8
1,367,653	+				-0.3
1,367,654	-				+0.2
1,367,654	-				-0.3
1,367,924	+		LU632_RS07225	0.36	+0.9
1,367,951	-		LU632_RS07225	0.39	-0.7
1,367,992	-		LU632_RS07225	0.44	-1.2
1,367,992	-		LU632_RS07225	0.44	-0.7
1,368,019	+		LU632_RS07225	0.48	+2.1
1,368,020	-		LU632_RS07225	0.48	+1.1
1,368,020	-		LU632_RS07225	0.48	+0.1
1,368,035	-		LU632_RS07225	0.50	-0.8
1,368,071	+		LU632_RS07225	0.54	-0.7
1,368,231	+		LU632_RS07225	0.73	-0.1
1,368,238	-		LU632_RS07225	0.74	-0.0
1,368,467	+				+0.1
1,368,611	+		LU632_RS07230	0.34	-1.0
1,368,612	-		LU632_RS07230	0.34	+1.3
1,368,612	-		LU632_RS07230	0.34	-0.5
1,368,669	+		LU632_RS07230	0.46	-0.7
1,368,670	-		LU632_RS07230	0.46	+2.7
1,368,670	-		LU632_RS07230	0.46	-0.7
1,368,753	+		LU632_RS07230	0.64	-0.5
1,368,859	+		LU632_RS07230	0.86	-0.9
1,368,859	+		LU632_RS07230	0.86	-0.4
1,368,859	+		LU632_RS07230	0.86	-1.5
1,368,860	-		LU632_RS07230	0.86	-0.4
1,368,860	-		LU632_RS07230	0.86	-0.4
1,368,860	-		LU632_RS07230	0.86	+1.1
1,368,861	+		LU632_RS07230	0.87	-0.6
1,368,862	-		LU632_RS07230	0.87	-0.2
1,368,902	+				+0.5
1,368,941	-				+0.7
1,368,941	-				-0.3
1,368,971	+				-0.5
1,368,972	-				+1.1
1,369,154	-				-2.0
1,369,154	-				+0.5