Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07210 and LU632_RS07215 are separated by 218 nucleotides LU632_RS07215 and LU632_RS07220 are separated by 76 nucleotides LU632_RS07220 and LU632_RS07225 are separated by 129 nucleotides LU632_RS07225 and LU632_RS07230 overlap by 4 nucleotides
LU632_RS07210: LU632_RS07210 - transcriptional regulator, at 1,366,154 to 1,366,513
_RS07210
LU632_RS07215: LU632_RS07215 - antitermination protein Q, at 1,366,732 to 1,367,187
_RS07215
LU632_RS07220: LU632_RS07220 - hypothetical protein, at 1,367,264 to 1,367,491
_RS07220
LU632_RS07225: LU632_RS07225 - DUF3289 family protein, at 1,367,621 to 1,368,456
_RS07225
LU632_RS07230: LU632_RS07230 - DUF943 family protein, at 1,368,453 to 1,368,923
_RS07230
Position (kb) 1367
1368 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1366.396 kb on - strand, within LU632_RS07210 at 1366.397 kb on + strand, within LU632_RS07210 at 1366.398 kb on - strand, within LU632_RS07210 at 1366.398 kb on - strand, within LU632_RS07210 at 1366.398 kb on - strand, within LU632_RS07210 at 1366.490 kb on - strand at 1366.524 kb on + strand at 1366.542 kb on + strand at 1366.657 kb on + strand at 1366.680 kb on - strand at 1366.961 kb on + strand, within LU632_RS07215 at 1366.961 kb on + strand, within LU632_RS07215 at 1366.961 kb on + strand, within LU632_RS07215 at 1366.965 kb on - strand, within LU632_RS07215 at 1367.065 kb on + strand, within LU632_RS07215 at 1367.189 kb on - strand at 1367.189 kb on - strand at 1367.358 kb on - strand, within LU632_RS07220 at 1367.456 kb on + strand, within LU632_RS07220 at 1367.457 kb on - strand, within LU632_RS07220 at 1367.481 kb on - strand at 1367.493 kb on + strand at 1367.538 kb on + strand at 1367.539 kb on - strand at 1367.547 kb on + strand at 1367.548 kb on - strand at 1367.570 kb on - strand at 1367.572 kb on + strand at 1367.601 kb on + strand at 1367.602 kb on - strand at 1367.602 kb on - strand at 1367.631 kb on + strand at 1367.632 kb on - strand at 1367.645 kb on - strand at 1367.649 kb on + strand at 1367.653 kb on + strand at 1367.654 kb on - strand at 1367.654 kb on - strand at 1367.924 kb on + strand, within LU632_RS07225 at 1367.951 kb on - strand, within LU632_RS07225 at 1367.992 kb on - strand, within LU632_RS07225 at 1367.992 kb on - strand, within LU632_RS07225 at 1368.019 kb on + strand, within LU632_RS07225 at 1368.020 kb on - strand, within LU632_RS07225 at 1368.020 kb on - strand, within LU632_RS07225 at 1368.035 kb on - strand, within LU632_RS07225 at 1368.071 kb on + strand, within LU632_RS07225 at 1368.231 kb on + strand, within LU632_RS07225 at 1368.238 kb on - strand, within LU632_RS07225 at 1368.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 1,366,396 - LU632_RS07210 0.67 +0.4 1,366,397 + LU632_RS07210 0.68 -0.4 1,366,398 - LU632_RS07210 0.68 +0.1 1,366,398 - LU632_RS07210 0.68 -1.1 1,366,398 - LU632_RS07210 0.68 +0.8 1,366,490 - +0.9 1,366,524 + +0.3 1,366,542 + +0.2 1,366,657 + +0.1 1,366,680 - -0.2 1,366,961 + LU632_RS07215 0.50 +0.0 1,366,961 + LU632_RS07215 0.50 +0.4 1,366,961 + LU632_RS07215 0.50 -0.2 1,366,965 - LU632_RS07215 0.51 +1.8 1,367,065 + LU632_RS07215 0.73 +0.1 1,367,189 - +0.4 1,367,189 - +0.3 1,367,358 - LU632_RS07220 0.41 +2.2 1,367,456 + LU632_RS07220 0.84 -1.2 1,367,457 - LU632_RS07220 0.85 -0.6 1,367,481 - -2.1 1,367,493 + +0.1 1,367,538 + +0.6 1,367,539 - -0.3 1,367,547 + +2.3 1,367,548 - -2.2 1,367,570 - -0.3 1,367,572 + +0.3 1,367,601 + +1.6 1,367,602 - -1.3 1,367,602 - +0.4 1,367,631 + -2.6 1,367,632 - -1.0 1,367,645 - -0.2 1,367,649 + -0.8 1,367,653 + -0.3 1,367,654 - +0.2 1,367,654 - -0.3 1,367,924 + LU632_RS07225 0.36 +0.9 1,367,951 - LU632_RS07225 0.39 -0.7 1,367,992 - LU632_RS07225 0.44 -1.2 1,367,992 - LU632_RS07225 0.44 -0.7 1,368,019 + LU632_RS07225 0.48 +2.1 1,368,020 - LU632_RS07225 0.48 +1.1 1,368,020 - LU632_RS07225 0.48 +0.1 1,368,035 - LU632_RS07225 0.50 -0.8 1,368,071 + LU632_RS07225 0.54 -0.7 1,368,231 + LU632_RS07225 0.73 -0.1 1,368,238 - LU632_RS07225 0.74 -0.0 1,368,467 + +0.1
Or see this region's nucleotide sequence