Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07180

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,359,239	-		LU632_RS07170	0.79	-0.5
1,359,263	+		LU632_RS07170	0.80	-0.8
1,359,263	+		LU632_RS07170	0.80	-1.5
1,359,264	-		LU632_RS07170	0.80	-0.3
1,359,264	-		LU632_RS07170	0.80	-0.5
1,359,264	-		LU632_RS07170	0.80	+1.1
1,359,265	+		LU632_RS07170	0.80	-1.2
1,359,266	-		LU632_RS07170	0.80	-1.9
1,359,393	+		LU632_RS07170	0.86	-0.7
1,359,400	+		LU632_RS07170	0.86	+1.4
1,359,400	+		LU632_RS07170	0.86	+0.9
1,359,522	+				+0.7
1,359,537	-				-0.2
1,359,719	+				+1.8
1,359,729	+				-0.1
1,359,730	-				-0.7
1,359,736	-				-1.5
1,359,758	+				+0.5
1,359,793	+		LU632_RS07175	0.17	+0.1
1,359,799	+		LU632_RS07175	0.18	-0.4
1,359,865	+		LU632_RS07175	0.33	+0.6
1,359,873	-		LU632_RS07175	0.35	-0.1
1,359,899	-		LU632_RS07175	0.41	-0.1
1,359,909	+		LU632_RS07175	0.43	-0.1
1,359,912	-		LU632_RS07175	0.44	+5.5
1,359,949	+		LU632_RS07175	0.52	+2.1
1,359,992	-		LU632_RS07175	0.62	+1.5
1,360,244	+				-1.5
1,360,316	-				-0.4
1,360,500	-		LU632_RS07180	0.23	-0.7
1,360,500	-		LU632_RS07180	0.23	+2.1
1,360,523	+		LU632_RS07180	0.25	-0.8
1,360,524	-		LU632_RS07180	0.25	-0.1
1,360,524	-		LU632_RS07180	0.25	+1.4
1,360,524	-		LU632_RS07180	0.25	+1.1
1,360,647	-		LU632_RS07180	0.35	+1.1
1,360,682	+		LU632_RS07180	0.38	-2.4
1,360,682	+		LU632_RS07180	0.38	-0.7
1,360,711	+		LU632_RS07180	0.40	-0.2
1,360,711	+		LU632_RS07180	0.40	-0.4
1,360,712	-		LU632_RS07180	0.40	+0.1
1,360,712	-		LU632_RS07180	0.40	-1.5
1,360,714	+		LU632_RS07180	0.40	+2.1
1,360,715	-		LU632_RS07180	0.40	-0.7
1,360,787	-		LU632_RS07180	0.46	+0.5
1,360,787	-		LU632_RS07180	0.46	+0.5
1,360,787	-		LU632_RS07180	0.46	+0.3
1,360,819	-		LU632_RS07180	0.49	+0.5
1,360,819	-		LU632_RS07180	0.49	-0.2
1,360,826	-		LU632_RS07180	0.49	-1.4
1,360,826	-		LU632_RS07180	0.49	-0.5
1,360,881	-		LU632_RS07180	0.54	-0.9
1,360,928	+		LU632_RS07180	0.57	+0.1
1,360,928	+		LU632_RS07180	0.57	-1.1
1,360,928	+		LU632_RS07180	0.57	-0.0
1,360,929	-		LU632_RS07180	0.57	-0.0
1,360,929	-		LU632_RS07180	0.57	+2.4
1,360,929	-		LU632_RS07180	0.57	+1.2
1,360,932	-		LU632_RS07180	0.58	+0.7
1,360,932	-		LU632_RS07180	0.58	+2.7
1,360,969	+		LU632_RS07180	0.60	-0.1
1,360,970	-		LU632_RS07180	0.61	-1.6
1,360,985	+		LU632_RS07180	0.62	+0.1
1,360,988	-		LU632_RS07180	0.62	-0.2
1,361,062	+		LU632_RS07180	0.68	+0.8
1,361,063	-		LU632_RS07180	0.68	-1.7
1,361,072	-		LU632_RS07180	0.69	-0.8
1,361,128	+		LU632_RS07180	0.73	+0.5
1,361,206	+		LU632_RS07180	0.79	-0.8
1,361,224	+		LU632_RS07180	0.81	+0.2
1,361,364	-				-0.2
1,361,368	+				+0.1
1,361,368	+				+2.2
1,361,368	+				-0.9
1,361,369	-				+0.3
1,361,379	+				+0.2
1,361,379	+				-0.2
1,361,460	+				-0.9
1,361,461	-				-1.0
1,361,594	+				+1.1
1,361,610	-				+0.7
1,361,622	+				+0.3
1,361,656	+		LU632_RS07185	0.10	-2.9
1,361,657	-		LU632_RS07185	0.11	-1.1
1,361,657	-		LU632_RS07185	0.11	+0.5
1,361,657	-		LU632_RS07185	0.11	-0.2
1,361,689	-		LU632_RS07185	0.13	-0.6
1,361,689	-		LU632_RS07185	0.13	+0.9
1,361,739	-		LU632_RS07185	0.18	+0.1
1,361,865	+		LU632_RS07185	0.29	-0.2
1,361,968	-		LU632_RS07185	0.38	-0.9
1,362,019	+		LU632_RS07185	0.42	+0.2
1,362,019	+		LU632_RS07185	0.42	-1.1
1,362,019	+		LU632_RS07185	0.42	-0.0
1,362,045	-		LU632_RS07185	0.44	-0.4
1,362,152	+		LU632_RS07185	0.53	-0.9
1,362,152	+		LU632_RS07185	0.53	-1.3
1,362,152	+		LU632_RS07185	0.53	+2.1
1,362,153	-		LU632_RS07185	0.54	+0.4
1,362,179	+		LU632_RS07185	0.56	-0.4
1,362,398	+		LU632_RS07185	0.75	-1.6
1,362,398	+		LU632_RS07185	0.75	-0.7
1,362,399	-		LU632_RS07185	0.75	+0.1
1,362,402	+		LU632_RS07185	0.75	-0.9
1,362,402	+		LU632_RS07185	0.75	-0.0
1,362,403	-		LU632_RS07185	0.75	+0.2
1,362,418	-		LU632_RS07185	0.77	+1.4
1,362,454	+		LU632_RS07185	0.80	-0.6
1,362,454	+		LU632_RS07185	0.80	+4.1
1,362,455	-		LU632_RS07185	0.80	+1.1