Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06755

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,298,309	+		LU632_RS06740	0.85	-0.2
1,298,309	+		LU632_RS06740	0.85	-1.8
1,298,309	+		LU632_RS06740	0.85	-1.3
1,298,309	+		LU632_RS06740	0.85	+0.5
1,298,311	+		LU632_RS06740	0.86	+1.0
1,298,311	+		LU632_RS06740	0.86	-0.7
1,298,405	-				+0.1
1,298,405	-				+0.5
1,298,405	-				+0.5
1,298,405	-				+0.1
1,298,405	-				+0.1
1,298,405	-				-1.0
1,298,405	-				-0.2
1,298,409	-				+0.1
1,298,534	-				-0.0
1,298,657	+		LU632_RS06745	0.63	-1.0
1,298,689	+		LU632_RS06745	0.79	+3.3
1,298,695	+		LU632_RS06745	0.83	+0.0
1,298,770	+				+2.1
1,298,770	+				+1.5
1,298,771	-				-0.5
1,298,771	-				-0.9
1,298,872	+				-0.3
1,298,872	+				-0.5
1,298,872	+				-1.3
1,298,873	-				+1.3
1,298,883	-				-1.2
1,298,922	+				-0.7
1,298,923	-				+0.4
1,298,923	-				-0.4
1,298,923	-				-0.0
1,298,923	-				+1.1
1,298,947	+				+0.3
1,299,010	-				+0.6
1,299,010	-				+0.7
1,299,011	+				-1.6
1,299,011	+				-1.0
1,299,012	-				-0.2
1,299,012	-				-0.8
1,299,012	-				-0.1
1,299,012	-				+0.4
1,299,013	+				-0.5
1,299,013	+				-1.0
1,299,014	-				+0.4
1,299,014	-				-0.3
1,299,079	-		LU632_RS06755	0.13	-0.6
1,299,142	+		LU632_RS06755	0.18	+0.5
1,299,142	+		LU632_RS06755	0.18	-0.1
1,299,233	+		LU632_RS06755	0.25	+1.1
1,299,234	-		LU632_RS06755	0.25	-1.3
1,299,245	+		LU632_RS06755	0.26	+0.5
1,299,368	-		LU632_RS06755	0.36	+0.3
1,299,425	-		LU632_RS06755	0.40	+1.1
1,299,460	+		LU632_RS06755	0.43	-0.3
1,299,463	+		LU632_RS06755	0.43	-1.3
1,299,463	+		LU632_RS06755	0.43	-0.7
1,299,482	-		LU632_RS06755	0.45	-0.8
1,299,567	-		LU632_RS06755	0.52	+1.1
1,299,590	+		LU632_RS06755	0.53	-0.4
1,299,590	+		LU632_RS06755	0.53	-0.4
1,299,591	-		LU632_RS06755	0.54	-0.2
1,299,591	-		LU632_RS06755	0.54	-0.8
1,299,591	-		LU632_RS06755	0.54	-0.4
1,299,704	+		LU632_RS06755	0.63	+1.9
1,299,705	-		LU632_RS06755	0.63	-0.2
1,299,787	+		LU632_RS06755	0.69	+0.2
1,299,787	+		LU632_RS06755	0.69	-0.6
1,299,787	+		LU632_RS06755	0.69	+0.7
1,299,905	+		LU632_RS06755	0.79	+0.7
1,299,912	-		LU632_RS06755	0.79	-1.2
1,299,936	-		LU632_RS06755	0.81	+0.1
1,299,986	-		LU632_RS06755	0.85	+0.5
1,300,167	+				+0.1
1,300,167	+				-0.9
1,300,167	+				-0.5
1,300,167	+				-0.3
1,300,167	+				-0.4
1,300,168	-				-2.6
1,300,168	-				+0.4
1,300,193	+				-0.2
1,300,194	-				+0.9
1,300,245	+				+0.7
1,300,246	-				-0.6
1,300,449	+				-1.3
1,300,452	+				-0.7
1,300,453	-				+0.5
1,300,453	-				+0.2
1,300,457	+				+0.3
1,300,524	-				-0.9
1,300,538	-				+1.1
1,300,565	+		LU632_RS06765	0.18	+0.0
1,300,631	+		LU632_RS06765	0.50	-0.2
1,300,644	+		LU632_RS06765	0.56	+1.6
1,300,645	-		LU632_RS06765	0.56	+0.1
1,300,654	+		LU632_RS06765	0.60	-0.6
1,300,654	+		LU632_RS06765	0.60	+0.3
1,300,713	+		LU632_RS06765	0.89	-0.7
1,300,772	+				-1.4
1,300,772	+				+0.1
1,300,776	-				-0.1
1,300,825	+				+1.8
1,300,844	-				-0.7
1,300,906	+		LU632_RS06770	0.19	+1.1
1,300,943	-		LU632_RS06770	0.31	-1.2
1,300,979	+		LU632_RS06770	0.42	-0.2
1,300,979	+		LU632_RS06770	0.42	-0.2
1,300,979	+		LU632_RS06770	0.42	-0.4
1,300,986	+		LU632_RS06770	0.44	+0.9
1,301,103	+		LU632_RS06770	0.80	+1.1
1,301,104	-		LU632_RS06770	0.81	+0.2
1,301,104	-		LU632_RS06770	0.81	+1.1
1,301,104	-		LU632_RS06770	0.81	+1.7
1,301,104	-		LU632_RS06770	0.81	+0.8
1,301,139	+				+0.4
1,301,145	+				+1.0