Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06435

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,237,597	-	cysN	LU632_RS06430	0.32	+0.4
1,237,597	-	cysN	LU632_RS06430	0.32	+0.1
1,237,617	+	cysN	LU632_RS06430	0.34	-0.8
1,237,617	+	cysN	LU632_RS06430	0.34	-1.8
1,237,618	-	cysN	LU632_RS06430	0.34	+2.6
1,237,734	+	cysN	LU632_RS06430	0.42	-0.5
1,237,735	-	cysN	LU632_RS06430	0.42	-1.3
1,237,804	+	cysN	LU632_RS06430	0.47	-0.7
1,237,804	+	cysN	LU632_RS06430	0.47	+0.7
1,237,804	+	cysN	LU632_RS06430	0.47	-0.4
1,237,805	-	cysN	LU632_RS06430	0.47	-0.7
1,237,891	+	cysN	LU632_RS06430	0.53	+0.7
1,237,891	+	cysN	LU632_RS06430	0.53	-0.4
1,237,891	+	cysN	LU632_RS06430	0.53	-0.2
1,237,891	+	cysN	LU632_RS06430	0.53	-0.1
1,237,891	+	cysN	LU632_RS06430	0.53	+0.0
1,237,892	-	cysN	LU632_RS06430	0.53	-0.2
1,237,980	-	cysN	LU632_RS06430	0.59	-1.8
1,238,069	+	cysN	LU632_RS06430	0.65	-1.4
1,238,205	+	cysN	LU632_RS06430	0.75	+1.7
1,238,548	-				-0.8
1,238,721	+	cysC	LU632_RS06435	0.26	-1.3
1,238,721	+	cysC	LU632_RS06435	0.26	-0.2
1,238,742	+	cysC	LU632_RS06435	0.29	-0.9
1,238,743	-	cysC	LU632_RS06435	0.29	-0.2
1,238,810	+	cysC	LU632_RS06435	0.40	-0.9
1,238,819	+	cysC	LU632_RS06435	0.42	-0.2
1,238,819	+	cysC	LU632_RS06435	0.42	-0.2
1,238,819	+	cysC	LU632_RS06435	0.42	-0.7
1,238,885	+	cysC	LU632_RS06435	0.53	-0.4
1,239,007	-	cysC	LU632_RS06435	0.73	+0.8
1,239,008	+	cysC	LU632_RS06435	0.73	-0.2
1,239,061	-	cysC	LU632_RS06435	0.82	-0.6
1,239,061	-	cysC	LU632_RS06435	0.82	-1.8
1,239,086	-	cysC	LU632_RS06435	0.86	-0.4
1,239,086	-	cysC	LU632_RS06435	0.86	-0.4
1,239,159	-				+1.6
1,239,221	+				-1.6
1,239,225	+				+0.8
1,239,225	+				+0.9
1,239,225	+				-1.2
1,239,225	+				+1.4
1,239,225	+				+0.3
1,239,225	+				-0.6
1,239,226	-				+0.1
1,239,226	-				-0.6
1,239,226	-				+0.3
1,239,366	+		LU632_RS06440	0.44	-0.2
1,239,385	+		LU632_RS06440	0.50	+1.1
1,239,385	+		LU632_RS06440	0.50	+1.0
1,239,387	+		LU632_RS06440	0.50	+0.2
1,239,388	-		LU632_RS06440	0.50	-0.1
1,239,469	-		LU632_RS06440	0.76	-0.7
1,239,469	-		LU632_RS06440	0.76	+1.2
1,239,550	-				-0.3
1,239,550	-				+3.2
1,239,553	+				-0.5
1,239,554	-				-0.4
1,239,554	-				-0.2
1,239,554	-				-0.4
1,239,659	-				+1.8
1,239,685	+				-0.7