Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05220 and LU632_RS05225 are separated by 9 nucleotides LU632_RS05225 and LU632_RS05230 overlap by 4 nucleotides
LU632_RS05220: LU632_RS05220 - integrating conjugative element protein, at 1,009,514 to 1,010,941
_RS05220
LU632_RS05225: LU632_RS05225 - hypothetical protein, at 1,010,951 to 1,011,289
_RS05225
LU632_RS05230: LU632_RS05230 - conjugal transfer protein TraG N-terminal domain-containing protein, at 1,011,286 to 1,012,821
_RS05230
Position (kb) 1010
1011
1012 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1010.143 kb on + strand, within LU632_RS05220 at 1010.224 kb on + strand, within LU632_RS05220 at 1010.365 kb on + strand, within LU632_RS05220 at 1010.366 kb on - strand, within LU632_RS05220 at 1010.474 kb on - strand, within LU632_RS05220 at 1010.474 kb on - strand, within LU632_RS05220 at 1010.735 kb on - strand, within LU632_RS05220 at 1010.735 kb on - strand, within LU632_RS05220 at 1010.752 kb on + strand, within LU632_RS05220 at 1010.753 kb on - strand, within LU632_RS05220 at 1010.753 kb on - strand, within LU632_RS05220 at 1010.893 kb on + strand at 1010.959 kb on + strand at 1010.960 kb on - strand at 1011.023 kb on - strand, within LU632_RS05225 at 1011.141 kb on - strand, within LU632_RS05225 at 1011.142 kb on + strand, within LU632_RS05225 at 1011.301 kb on + strand at 1011.301 kb on + strand at 1011.302 kb on - strand at 1011.302 kb on - strand at 1011.310 kb on + strand at 1011.340 kb on - strand at 1011.400 kb on - strand at 1011.453 kb on + strand, within LU632_RS05230 at 1011.494 kb on - strand, within LU632_RS05230 at 1011.693 kb on + strand, within LU632_RS05230 at 1011.693 kb on + strand, within LU632_RS05230 at 1011.693 kb on + strand, within LU632_RS05230 at 1011.694 kb on - strand, within LU632_RS05230 at 1011.762 kb on - strand, within LU632_RS05230 at 1011.853 kb on + strand, within LU632_RS05230 at 1011.853 kb on + strand, within LU632_RS05230 at 1011.950 kb on - strand, within LU632_RS05230 at 1012.050 kb on + strand, within LU632_RS05230 at 1012.051 kb on - strand, within LU632_RS05230 at 1012.051 kb on - strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.238 kb on + strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.239 kb on - strand, within LU632_RS05230 at 1012.241 kb on - strand, within LU632_RS05230
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 1,010,143 + LU632_RS05220 0.44 +0.8 1,010,224 + LU632_RS05220 0.50 -0.2 1,010,365 + LU632_RS05220 0.60 -0.1 1,010,366 - LU632_RS05220 0.60 -1.4 1,010,474 - LU632_RS05220 0.67 +4.6 1,010,474 - LU632_RS05220 0.67 -1.7 1,010,735 - LU632_RS05220 0.86 -0.9 1,010,735 - LU632_RS05220 0.86 -0.2 1,010,752 + LU632_RS05220 0.87 +1.4 1,010,753 - LU632_RS05220 0.87 -1.4 1,010,753 - LU632_RS05220 0.87 -0.0 1,010,893 + +0.1 1,010,959 + -1.4 1,010,960 - -0.4 1,011,023 - LU632_RS05225 0.21 -1.2 1,011,141 - LU632_RS05225 0.56 -0.7 1,011,142 + LU632_RS05225 0.56 +1.1 1,011,301 + +1.9 1,011,301 + -1.2 1,011,302 - +0.1 1,011,302 - +0.6 1,011,310 + +4.5 1,011,340 - +1.1 1,011,400 - -0.3 1,011,453 + LU632_RS05230 0.11 -1.2 1,011,494 - LU632_RS05230 0.14 -0.1 1,011,693 + LU632_RS05230 0.26 -0.8 1,011,693 + LU632_RS05230 0.26 -0.1 1,011,693 + LU632_RS05230 0.26 +4.6 1,011,694 - LU632_RS05230 0.27 -0.7 1,011,762 - LU632_RS05230 0.31 -2.6 1,011,853 + LU632_RS05230 0.37 -0.3 1,011,853 + LU632_RS05230 0.37 -0.8 1,011,950 - LU632_RS05230 0.43 +0.3 1,012,050 + LU632_RS05230 0.50 +0.2 1,012,051 - LU632_RS05230 0.50 +0.1 1,012,051 - LU632_RS05230 0.50 +1.8 1,012,238 + LU632_RS05230 0.62 +1.0 1,012,238 + LU632_RS05230 0.62 -0.6 1,012,238 + LU632_RS05230 0.62 +1.2 1,012,238 + LU632_RS05230 0.62 +0.6 1,012,238 + LU632_RS05230 0.62 -0.2 1,012,238 + LU632_RS05230 0.62 -2.8 1,012,239 - LU632_RS05230 0.62 +0.8 1,012,239 - LU632_RS05230 0.62 -0.4 1,012,239 - LU632_RS05230 0.62 +0.4 1,012,239 - LU632_RS05230 0.62 +0.2 1,012,239 - LU632_RS05230 0.62 +0.6 1,012,241 - LU632_RS05230 0.62 +1.2
Or see this region's nucleotide sequence