Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04770 and LU632_RS04775 are separated by 149 nucleotides LU632_RS04775 and LU632_RS04780 overlap by 4 nucleotides LU632_RS04780 and LU632_RS04785 are separated by 556 nucleotides
LU632_RS04770: LU632_RS04770 - AlpA family transcriptional regulator, at 938,202 to 938,405
_RS04770
LU632_RS04775: LU632_RS04775 - hypothetical protein, at 938,555 to 938,803
_RS04775
LU632_RS04780: LU632_RS04780 - replication initiation protein, at 938,800 to 939,492
_RS04780
LU632_RS04785: LU632_RS04785 - DUF2778 domain-containing protein, at 940,049 to 940,567
_RS04785
Position (kb) 938
939
940 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 937.818 kb on - strand at 937.857 kb on - strand at 937.857 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.960 kb on + strand at 938.053 kb on + strand at 938.077 kb on - strand at 938.108 kb on - strand at 938.172 kb on - strand at 938.201 kb on + strand at 938.221 kb on + strand at 938.444 kb on + strand at 938.460 kb on - strand at 938.502 kb on - strand at 939.260 kb on + strand, within LU632_RS04780 at 939.434 kb on - strand at 939.434 kb on - strand at 939.847 kb on + strand at 939.941 kb on - strand at 940.031 kb on - strand at 940.049 kb on - strand at 940.056 kb on + strand at 940.057 kb on - strand at 940.088 kb on + strand at 940.107 kb on - strand, within LU632_RS04785 at 940.120 kb on - strand, within LU632_RS04785 at 940.120 kb on - strand, within LU632_RS04785 at 940.144 kb on + strand, within LU632_RS04785 at 940.145 kb on - strand, within LU632_RS04785 at 940.178 kb on - strand, within LU632_RS04785 at 940.328 kb on + strand, within LU632_RS04785 at 940.328 kb on + strand, within LU632_RS04785 at 940.366 kb on - strand, within LU632_RS04785 at 940.366 kb on - strand, within LU632_RS04785 at 940.424 kb on - strand, within LU632_RS04785 at 940.424 kb on - strand, within LU632_RS04785 at 940.426 kb on - strand, within LU632_RS04785 at 940.429 kb on + strand, within LU632_RS04785 at 940.429 kb on + strand, within LU632_RS04785 at 940.460 kb on - strand, within LU632_RS04785
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 937,818 - -2.5 937,857 - -0.7 937,857 - -0.1 937,884 - -0.1 937,884 - +1.7 937,960 + +1.5 938,053 + +1.6 938,077 - -1.2 938,108 - -1.4 938,172 - -0.0 938,201 + +0.2 938,221 + -0.6 938,444 + -0.2 938,460 - +0.1 938,502 - +1.8 939,260 + LU632_RS04780 0.66 -2.6 939,434 - +0.3 939,434 - -1.2 939,847 + -0.0 939,941 - -1.6 940,031 - +3.6 940,049 - -0.2 940,056 + +1.1 940,057 - +1.4 940,088 + -0.3 940,107 - LU632_RS04785 0.11 -0.1 940,120 - LU632_RS04785 0.14 -2.2 940,120 - LU632_RS04785 0.14 -0.9 940,144 + LU632_RS04785 0.18 +0.5 940,145 - LU632_RS04785 0.18 +0.7 940,178 - LU632_RS04785 0.25 +0.3 940,328 + LU632_RS04785 0.54 +1.1 940,328 + LU632_RS04785 0.54 -0.9 940,366 - LU632_RS04785 0.61 -0.3 940,366 - LU632_RS04785 0.61 +1.1 940,424 - LU632_RS04785 0.72 -0.1 940,424 - LU632_RS04785 0.72 -0.1 940,426 - LU632_RS04785 0.73 -1.4 940,429 + LU632_RS04785 0.73 -0.4 940,429 + LU632_RS04785 0.73 -0.5 940,460 - LU632_RS04785 0.79 +0.3
Or see this region's nucleotide sequence