Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04750

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04745 and LU632_RS04750 are separated by 407 nucleotidesLU632_RS04750 and LU632_RS04755 overlap by 11 nucleotidesLU632_RS04755 and LU632_RS04760 are separated by 6 nucleotides LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792 _RS04745 LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996 _RS04750 LU632_RS04755: LU632_RS04755 - TraI domain-containing protein, at 934,986 to 935,738 _RS04755 LU632_RS04760: LU632_RS04760 - DNA-binding domain-containing protein, at 935,745 to 936,566 _RS04760 Position (kb) 934 935Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 933.852 kb on + strandat 933.852 kb on + strandat 933.852 kb on + strandat 933.852 kb on + strandat 933.863 kb on + strandat 933.866 kb on + strandat 933.875 kb on + strandat 933.883 kb on - strandat 933.886 kb on + strandat 933.886 kb on + strandat 933.886 kb on + strandat 933.886 kb on + strandat 933.886 kb on - strandat 933.887 kb on - strandat 933.916 kb on - strandat 933.965 kb on + strandat 933.993 kb on + strandat 933.994 kb on - strandat 933.997 kb on - strandat 934.067 kb on + strandat 934.068 kb on - strandat 934.070 kb on + strandat 934.286 kb on + strand, within LU632_RS04750at 934.287 kb on - strand, within LU632_RS04750at 934.342 kb on - strand, within LU632_RS04750at 934.350 kb on + strand, within LU632_RS04750at 934.350 kb on + strand, within LU632_RS04750at 934.478 kb on + strand, within LU632_RS04750at 934.479 kb on - strand, within LU632_RS04750at 934.502 kb on - strand, within LU632_RS04750at 934.583 kb on + strand, within LU632_RS04750at 934.649 kb on + strand, within LU632_RS04750at 934.650 kb on - strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.847 kb on + strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.848 kb on - strand, within LU632_RS04750at 934.935 kb on + strandat 934.936 kb on - strandat 935.073 kb on + strand, within LU632_RS04755at 935.073 kb on + strand, within LU632_RS04755at 935.074 kb on - strand, within LU632_RS04755at 935.170 kb on + strand, within LU632_RS04755at 935.170 kb on + strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.171 kb on - strand, within LU632_RS04755at 935.298 kb on + strand, within LU632_RS04755at 935.322 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.324 kb on + strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.325 kb on - strand, within LU632_RS04755at 935.410 kb on - strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.476 kb on + strand, within LU632_RS04755at 935.477 kb on - strand, within LU632_RS04755at 935.606 kb on + strand, within LU632_RS04755at 935.660 kb on + strand, within LU632_RS04755at 935.660 kb on + strand, within LU632_RS04755at 935.661 kb on - strand, within LU632_RS04755at 935.716 kb on + strandat 935.912 kb on + strand, within LU632_RS04760at 935.912 kb on + strand, within LU632_RS04760at 935.913 kb on - strand, within LU632_RS04760at 935.913 kb on - strand, within LU632_RS04760

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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933,852 + -0.6
933,852 + +1.5
933,852 + +4.3
933,852 + +0.4
933,863 + -0.1
933,866 + -1.1
933,875 + -1.5
933,883 - +0.6
933,886 + -1.5
933,886 + -0.2
933,886 + +0.2
933,886 + -1.1
933,886 - -0.2
933,887 - +0.5
933,916 - +0.9
933,965 + -0.7
933,993 + +1.0
933,994 - -0.8
933,997 - -0.9
934,067 + +1.6
934,068 - -1.8
934,070 + -1.4
934,286 + LU632_RS04750 0.11 +0.1
934,287 - LU632_RS04750 0.11 +1.1
934,342 - LU632_RS04750 0.18 -0.8
934,350 + LU632_RS04750 0.19 -0.0
934,350 + LU632_RS04750 0.19 +0.0
934,478 + LU632_RS04750 0.35 +0.4
934,479 - LU632_RS04750 0.35 -1.4
934,502 - LU632_RS04750 0.38 -0.5
934,583 + LU632_RS04750 0.48 +1.1
934,649 + LU632_RS04750 0.56 -1.3
934,650 - LU632_RS04750 0.56 +3.1
934,847 + LU632_RS04750 0.81 +0.2
934,847 + LU632_RS04750 0.81 +0.7
934,847 + LU632_RS04750 0.81 +0.7
934,847 + LU632_RS04750 0.81 -0.2
934,848 - LU632_RS04750 0.81 -0.4
934,848 - LU632_RS04750 0.81 -1.1
934,848 - LU632_RS04750 0.81 +1.1
934,935 + +2.1
934,936 - -0.6
935,073 + LU632_RS04755 0.12 +0.1
935,073 + LU632_RS04755 0.12 -0.6
935,074 - LU632_RS04755 0.12 -0.6
935,170 + LU632_RS04755 0.24 +1.4
935,170 + LU632_RS04755 0.24 -0.2
935,171 - LU632_RS04755 0.25 -2.6
935,171 - LU632_RS04755 0.25 -1.1
935,171 - LU632_RS04755 0.25 -3.3
935,298 + LU632_RS04755 0.41 -0.2
935,322 + LU632_RS04755 0.45 -0.3
935,324 + LU632_RS04755 0.45 -0.6
935,324 + LU632_RS04755 0.45 -0.1
935,324 + LU632_RS04755 0.45 -0.9
935,324 + LU632_RS04755 0.45 -0.6
935,325 - LU632_RS04755 0.45 -1.5
935,325 - LU632_RS04755 0.45 +1.1
935,325 - LU632_RS04755 0.45 +0.1
935,325 - LU632_RS04755 0.45 -0.5
935,325 - LU632_RS04755 0.45 -0.3
935,325 - LU632_RS04755 0.45 -0.8
935,325 - LU632_RS04755 0.45 +0.1
935,410 - LU632_RS04755 0.56 -0.0
935,476 + LU632_RS04755 0.65 +0.0
935,476 + LU632_RS04755 0.65 -1.5
935,476 + LU632_RS04755 0.65 +0.1
935,476 + LU632_RS04755 0.65 -0.5
935,477 - LU632_RS04755 0.65 -0.9
935,606 + LU632_RS04755 0.82 +0.5
935,660 + LU632_RS04755 0.90 -1.0
935,660 + LU632_RS04755 0.90 +0.2
935,661 - LU632_RS04755 0.90 -1.0
935,716 + -0.7
935,912 + LU632_RS04760 0.20 -0.7
935,912 + LU632_RS04760 0.20 +0.8
935,913 - LU632_RS04760 0.20 -0.4
935,913 - LU632_RS04760 0.20 -1.2

Or see this region's nucleotide sequence