Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04710 and LU632_RS04715 are separated by 350 nucleotides LU632_RS04715 and LU632_RS04720 are separated by 207 nucleotides LU632_RS04720 and LU632_RS04725 overlap by 14 nucleotides
LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359
_RS04710
LU632_RS04715: LU632_RS04715 - IS5 family transposase, at 924,710 to 925,477
_RS04715
LU632_RS04720: LU632_RS04720 - response regulator transcription factor, at 925,685 to 926,320
_RS04720
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 923.907 kb on - strand, within LU632_RS04710 at 924.491 kb on - strand at 924.491 kb on - strand at 924.491 kb on - strand at 924.516 kb on - strand at 924.516 kb on - strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.590 kb on + strand at 924.591 kb on - strand at 924.591 kb on - strand at 924.597 kb on + strand at 924.598 kb on - strand at 924.599 kb on + strand at 924.600 kb on - strand at 924.601 kb on + strand at 924.602 kb on - strand at 924.629 kb on + strand at 924.630 kb on - strand at 924.665 kb on + strand at 924.666 kb on - strand at 924.666 kb on - strand at 924.672 kb on + strand at 924.673 kb on - strand at 924.674 kb on + strand at 924.674 kb on + strand at 924.675 kb on - strand at 924.675 kb on - strand at 924.689 kb on + strand at 924.708 kb on + strand at 924.728 kb on + strand at 924.752 kb on - strand at 924.854 kb on - strand, within LU632_RS04715 at 924.854 kb on - strand, within LU632_RS04715 at 924.958 kb on + strand, within LU632_RS04715 at 924.959 kb on - strand, within LU632_RS04715 at 924.963 kb on - strand, within LU632_RS04715 at 925.119 kb on + strand, within LU632_RS04715 at 925.119 kb on - strand, within LU632_RS04715 at 925.120 kb on - strand, within LU632_RS04715 at 925.142 kb on - strand, within LU632_RS04715 at 925.338 kb on - strand, within LU632_RS04715 at 925.391 kb on - strand, within LU632_RS04715 at 925.413 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.500 kb on - strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.501 kb on + strand at 925.502 kb on + strand at 925.502 kb on - strand at 925.549 kb on - strand at 925.576 kb on + strand at 925.577 kb on - strand at 925.577 kb on - strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.600 kb on + strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.601 kb on - strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.628 kb on + strand at 925.629 kb on - strand at 925.631 kb on - strand at 925.631 kb on - strand at 925.684 kb on + strand at 925.684 kb on + strand at 925.685 kb on - strand at 925.685 kb on - strand at 925.762 kb on + strand, within LU632_RS04720 at 925.774 kb on + strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.781 kb on - strand, within LU632_RS04720 at 925.886 kb on - strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.906 kb on + strand, within LU632_RS04720 at 925.942 kb on - strand, within LU632_RS04720 at 925.943 kb on + strand, within LU632_RS04720 at 925.982 kb on - strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.032 kb on + strand, within LU632_RS04720 at 926.212 kb on + strand, within LU632_RS04720 at 926.213 kb on - strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.228 kb on + strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.229 kb on - strand, within LU632_RS04720 at 926.230 kb on + strand, within LU632_RS04720 at 926.278 kb on + strand at 926.336 kb on - strand at 926.381 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 923,907 - LU632_RS04710 0.55 +0.0 924,491 - -0.5 924,491 - -1.4 924,491 - -0.6 924,516 - +0.8 924,516 - -0.6 924,568 + -0.6 924,569 - +0.2 924,590 + +0.5 924,591 - +0.2 924,591 - -0.1 924,597 + -1.7 924,598 - -0.7 924,599 + -0.4 924,600 - -0.5 924,601 + +1.4 924,602 - +0.0 924,629 + -0.5 924,630 - -1.6 924,665 + -1.0 924,666 - -0.2 924,666 - -0.3 924,672 + +2.4 924,673 - -0.1 924,674 + +0.0 924,674 + +2.1 924,675 - +0.1 924,675 - -1.4 924,689 + -2.4 924,708 + -0.4 924,728 + -1.1 924,752 - -0.4 924,854 - LU632_RS04715 0.19 +0.2 924,854 - LU632_RS04715 0.19 -0.0 924,958 + LU632_RS04715 0.32 +0.5 924,959 - LU632_RS04715 0.32 -0.5 924,963 - LU632_RS04715 0.33 -0.6 925,119 + LU632_RS04715 0.53 -0.3 925,119 - LU632_RS04715 0.53 +0.1 925,120 - LU632_RS04715 0.53 -0.9 925,142 - LU632_RS04715 0.56 -0.4 925,338 - LU632_RS04715 0.82 -1.4 925,391 - LU632_RS04715 0.89 -0.6 925,413 - -0.2 925,500 - -0.7 925,500 - -1.0 925,500 - -0.2 925,500 - +0.1 925,501 + -1.2 925,501 + +0.6 925,501 + -0.3 925,501 + -1.2 925,501 + -0.1 925,502 + -0.8 925,502 - +1.4 925,549 - -1.0 925,576 + -0.3 925,577 - -2.2 925,577 - -0.1 925,600 + +0.9 925,600 + +0.8 925,600 + -0.7 925,600 + +1.3 925,601 - +0.3 925,601 - -0.4 925,601 - -1.2 925,628 + +0.1 925,628 + -0.9 925,628 + -1.2 925,629 - -0.2 925,631 - -0.9 925,631 - +0.0 925,684 + +3.0 925,684 + -0.6 925,685 - +0.3 925,685 - +0.8 925,762 + LU632_RS04720 0.12 -1.0 925,774 + LU632_RS04720 0.14 +2.3 925,781 - LU632_RS04720 0.15 +2.1 925,781 - LU632_RS04720 0.15 +2.1 925,886 - LU632_RS04720 0.32 +1.1 925,906 + LU632_RS04720 0.35 +0.1 925,906 + LU632_RS04720 0.35 -0.9 925,942 - LU632_RS04720 0.40 -0.9 925,943 + LU632_RS04720 0.41 -0.8 925,982 - LU632_RS04720 0.47 +0.0 926,032 + LU632_RS04720 0.55 -1.0 926,032 + LU632_RS04720 0.55 -0.8 926,212 + LU632_RS04720 0.83 +1.3 926,213 - LU632_RS04720 0.83 -1.4 926,228 + LU632_RS04720 0.85 -0.7 926,228 + LU632_RS04720 0.85 -0.3 926,228 + LU632_RS04720 0.85 +1.1 926,229 - LU632_RS04720 0.86 -1.8 926,229 - LU632_RS04720 0.86 -0.9 926,230 + LU632_RS04720 0.86 -1.1 926,278 + +0.1 926,336 - +0.1 926,381 + +0.7
Or see this region's nucleotide sequence