Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04665

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04660 and LU632_RS04665 are separated by 386 nucleotidesLU632_RS04665 and LU632_RS04670 are separated by 566 nucleotides LU632_RS04660: LU632_RS04660 - IS481 family transposase, at 911,750 to 912,790 _RS04660 LU632_RS04665: LU632_RS04665 - IS3 family transposase, at 913,177 to 914,351 _RS04665 LU632_RS04670: LU632_RS04670 - conjugative transfer ATPase, at 914,918 to 916,131 _RS04670 Position (kb) 913 914 915Strain fitness (log2 ratio) -1 0 1 2at 912.905 kb on + strandat 912.909 kb on - strandat 912.919 kb on - strandat 912.919 kb on - strandat 912.950 kb on - strandat 913.003 kb on + strandat 913.034 kb on + strandat 913.039 kb on + strandat 913.039 kb on + strandat 913.066 kb on + strandat 913.119 kb on - strandat 913.142 kb on + strandat 913.153 kb on + strandat 913.157 kb on + strandat 913.158 kb on - strandat 913.172 kb on - strandat 913.251 kb on + strandat 913.253 kb on + strandat 914.410 kb on + strandat 914.431 kb on + strandat 914.432 kb on - strandat 914.481 kb on - strandat 914.529 kb on + strandat 914.614 kb on + strandat 914.615 kb on - strandat 914.616 kb on + strandat 914.616 kb on + strandat 914.616 kb on + strandat 914.617 kb on - strandat 914.671 kb on - strandat 914.671 kb on - strandat 914.671 kb on - strandat 914.711 kb on - strandat 914.888 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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912,905 + +0.2
912,909 - +1.0
912,919 - +0.0
912,919 - +0.3
912,950 - +0.9
913,003 + -1.2
913,034 + -1.1
913,039 + +0.9
913,039 + +0.9
913,066 + +0.2
913,119 - +0.5
913,142 + +0.8
913,153 + -0.2
913,157 + -0.7
913,158 - -0.6
913,172 - -0.6
913,251 + -1.1
913,253 + -0.2
914,410 + +0.3
914,431 + -0.9
914,432 - -1.5
914,481 - -1.0
914,529 + +0.0
914,614 + +0.5
914,615 - -0.0
914,616 + -0.9
914,616 + -0.4
914,616 + -0.6
914,617 - -0.2
914,671 - +2.3
914,671 - +0.1
914,671 - -1.2
914,711 - +2.1
914,888 + -0.6

Or see this region's nucleotide sequence