Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03640 and LU632_RS03645 overlap by 1 nucleotides LU632_RS03645 and LU632_RS03650 are separated by 131 nucleotides LU632_RS03650 and LU632_RS03655 are separated by 15 nucleotides LU632_RS03655 and LU632_RS03660 are separated by 61 nucleotides LU632_RS03660 and LU632_RS03665 are separated by 32 nucleotides
LU632_RS03640: LU632_RS03640 - phage tail protein, at 730,027 to 731,085
_RS03640
LU632_RS03645: LU632_RS03645 - tail fiber assembly protein, at 731,085 to 731,681
_RS03645
LU632_RS03650: LU632_RS03650 - phage tail sheath protein, at 731,813 to 733,000
_RS03650
LU632_RS03655: LU632_RS03655 - phage major tail tube protein, at 733,016 to 733,534
_RS03655
LU632_RS03660: LU632_RS03660 - phage tail assembly protein, at 733,596 to 733,931
_RS03660
LU632_RS03665: LU632_RS03665 - GpE family phage tail protein, at 733,964 to 734,083
_RS03665
Position (kb) 731
732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15 at 730.822 kb on - strand, within LU632_RS03640 at 730.854 kb on + strand, within LU632_RS03640 at 730.854 kb on + strand, within LU632_RS03640 at 730.855 kb on - strand, within LU632_RS03640 at 730.857 kb on + strand, within LU632_RS03640 at 730.858 kb on - strand, within LU632_RS03640 at 730.877 kb on + strand, within LU632_RS03640 at 730.877 kb on + strand, within LU632_RS03640 at 730.878 kb on - strand, within LU632_RS03640 at 730.878 kb on - strand, within LU632_RS03640 at 730.947 kb on + strand, within LU632_RS03640 at 730.947 kb on + strand, within LU632_RS03640 at 730.947 kb on + strand, within LU632_RS03640 at 730.947 kb on + strand, within LU632_RS03640 at 730.958 kb on + strand, within LU632_RS03640 at 730.959 kb on - strand, within LU632_RS03640 at 730.977 kb on + strand, within LU632_RS03640 at 731.026 kb on - strand at 731.049 kb on + strand at 731.062 kb on - strand at 731.062 kb on - strand at 731.065 kb on + strand at 731.136 kb on - strand at 731.145 kb on + strand, within LU632_RS03645 at 731.145 kb on + strand, within LU632_RS03645 at 731.147 kb on + strand, within LU632_RS03645 at 731.151 kb on + strand, within LU632_RS03645 at 731.151 kb on + strand, within LU632_RS03645 at 731.151 kb on + strand, within LU632_RS03645 at 731.151 kb on + strand, within LU632_RS03645 at 731.152 kb on - strand, within LU632_RS03645 at 731.152 kb on - strand, within LU632_RS03645 at 731.301 kb on + strand, within LU632_RS03645 at 731.301 kb on + strand, within LU632_RS03645 at 731.331 kb on + strand, within LU632_RS03645 at 731.331 kb on + strand, within LU632_RS03645 at 731.332 kb on - strand, within LU632_RS03645 at 731.363 kb on + strand, within LU632_RS03645 at 731.379 kb on + strand, within LU632_RS03645 at 731.380 kb on - strand, within LU632_RS03645 at 731.388 kb on - strand, within LU632_RS03645 at 731.418 kb on + strand, within LU632_RS03645 at 731.419 kb on - strand, within LU632_RS03645 at 731.610 kb on + strand, within LU632_RS03645 at 731.610 kb on - strand, within LU632_RS03645 at 731.721 kb on + strand at 731.721 kb on + strand at 731.722 kb on - strand at 731.752 kb on + strand at 731.780 kb on + strand at 731.780 kb on + strand at 731.780 kb on + strand at 731.807 kb on - strand at 731.875 kb on + strand at 732.151 kb on + strand, within LU632_RS03650 at 732.151 kb on + strand, within LU632_RS03650 at 732.272 kb on - strand, within LU632_RS03650 at 732.313 kb on + strand, within LU632_RS03650 at 732.462 kb on - strand, within LU632_RS03650 at 732.680 kb on + strand, within LU632_RS03650 at 732.680 kb on + strand, within LU632_RS03650 at 732.681 kb on - strand, within LU632_RS03650 at 732.821 kb on + strand, within LU632_RS03650 at 732.822 kb on - strand, within LU632_RS03650 at 732.894 kb on - strand at 732.894 kb on - strand at 732.894 kb on - strand at 732.894 kb on - strand at 732.894 kb on - strand at 732.908 kb on + strand at 732.908 kb on + strand at 732.908 kb on + strand at 732.909 kb on - strand at 732.910 kb on + strand at 732.966 kb on - strand at 732.998 kb on + strand at 732.999 kb on - strand at 733.023 kb on + strand at 733.041 kb on - strand at 733.070 kb on + strand, within LU632_RS03655 at 733.070 kb on + strand, within LU632_RS03655 at 733.071 kb on - strand, within LU632_RS03655 at 733.071 kb on - strand, within LU632_RS03655 at 733.373 kb on - strand, within LU632_RS03655 at 733.419 kb on - strand, within LU632_RS03655 at 733.568 kb on + strand at 733.569 kb on - strand at 733.613 kb on + strand at 733.614 kb on - strand at 733.828 kb on - strand, within LU632_RS03660
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 730,822 - LU632_RS03640 0.75 -1.6 730,854 + LU632_RS03640 0.78 -0.2 730,854 + LU632_RS03640 0.78 +1.8 730,855 - LU632_RS03640 0.78 +1.6 730,857 + LU632_RS03640 0.78 +1.1 730,858 - LU632_RS03640 0.78 +3.7 730,877 + LU632_RS03640 0.80 -3.5 730,877 + LU632_RS03640 0.80 -0.7 730,878 - LU632_RS03640 0.80 -0.7 730,878 - LU632_RS03640 0.80 +0.7 730,947 + LU632_RS03640 0.87 -0.6 730,947 + LU632_RS03640 0.87 +1.1 730,947 + LU632_RS03640 0.87 +0.5 730,947 + LU632_RS03640 0.87 -0.1 730,958 + LU632_RS03640 0.88 +0.5 730,959 - LU632_RS03640 0.88 -1.1 730,977 + LU632_RS03640 0.90 -2.0 731,026 - -0.3 731,049 + -0.5 731,062 - +1.6 731,062 - -0.8 731,065 + +1.1 731,136 - -0.2 731,145 + LU632_RS03645 0.10 -0.5 731,145 + LU632_RS03645 0.10 -1.5 731,147 + LU632_RS03645 0.10 +1.1 731,151 + LU632_RS03645 0.11 +0.3 731,151 + LU632_RS03645 0.11 +0.5 731,151 + LU632_RS03645 0.11 -0.2 731,151 + LU632_RS03645 0.11 +1.1 731,152 - LU632_RS03645 0.11 +0.1 731,152 - LU632_RS03645 0.11 -0.4 731,301 + LU632_RS03645 0.36 +0.5 731,301 + LU632_RS03645 0.36 -0.7 731,331 + LU632_RS03645 0.41 -1.8 731,331 + LU632_RS03645 0.41 +0.5 731,332 - LU632_RS03645 0.41 +0.2 731,363 + LU632_RS03645 0.47 -2.4 731,379 + LU632_RS03645 0.49 +0.4 731,380 - LU632_RS03645 0.49 +0.7 731,388 - LU632_RS03645 0.51 -1.6 731,418 + LU632_RS03645 0.56 -0.3 731,419 - LU632_RS03645 0.56 -1.2 731,610 + LU632_RS03645 0.88 +0.3 731,610 - LU632_RS03645 0.88 -0.3 731,721 + +1.1 731,721 + -0.2 731,722 - -0.4 731,752 + -0.2 731,780 + +0.5 731,780 + +1.8 731,780 + -0.1 731,807 - -0.9 731,875 + -1.2 732,151 + LU632_RS03650 0.28 -2.1 732,151 + LU632_RS03650 0.28 -0.9 732,272 - LU632_RS03650 0.39 -2.3 732,313 + LU632_RS03650 0.42 -1.3 732,462 - LU632_RS03650 0.55 +0.1 732,680 + LU632_RS03650 0.73 +0.2 732,680 + LU632_RS03650 0.73 +14.8 732,681 - LU632_RS03650 0.73 +0.2 732,821 + LU632_RS03650 0.85 +0.1 732,822 - LU632_RS03650 0.85 +0.1 732,894 - -1.7 732,894 - -0.6 732,894 - +1.4 732,894 - -0.4 732,894 - -1.4 732,908 + -1.7 732,908 + +0.1 732,908 + -0.3 732,909 - +1.1 732,910 + -0.5 732,966 - -0.9 732,998 + -0.7 732,999 - +0.4 733,023 + +0.2 733,041 - -1.0 733,070 + LU632_RS03655 0.10 +0.4 733,070 + LU632_RS03655 0.10 -0.4 733,071 - LU632_RS03655 0.11 +1.1 733,071 - LU632_RS03655 0.11 +1.1 733,373 - LU632_RS03655 0.69 -0.4 733,419 - LU632_RS03655 0.78 -0.5 733,568 + +2.1 733,569 - -0.5 733,613 + -0.7 733,614 - -0.4 733,828 - LU632_RS03660 0.69 +0.8
Or see this region's nucleotide sequence