Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03640

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03630 and LU632_RS03635 overlap by 8 nucleotidesLU632_RS03635 and LU632_RS03640 overlap by 4 nucleotidesLU632_RS03640 and LU632_RS03645 overlap by 1 nucleotidesLU632_RS03645 and LU632_RS03650 are separated by 131 nucleotides LU632_RS03630: LU632_RS03630 - baseplate assembly protein, at 728,521 to 729,429 _RS03630 LU632_RS03635: LU632_RS03635 - phage tail protein I, at 729,422 to 730,030 _RS03635 LU632_RS03640: LU632_RS03640 - phage tail protein, at 730,027 to 731,085 _RS03640 LU632_RS03645: LU632_RS03645 - tail fiber assembly protein, at 731,085 to 731,681 _RS03645 LU632_RS03650: LU632_RS03650 - phage tail sheath protein, at 731,813 to 733,000 _RS03650 Position (kb) 730 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 729.030 kb on + strand, within LU632_RS03630at 729.090 kb on + strand, within LU632_RS03630at 729.247 kb on + strand, within LU632_RS03630at 729.369 kb on + strandat 729.397 kb on + strandat 729.404 kb on + strandat 729.405 kb on - strandat 729.408 kb on + strandat 729.409 kb on - strandat 729.803 kb on + strand, within LU632_RS03635at 729.804 kb on - strand, within LU632_RS03635at 729.896 kb on + strand, within LU632_RS03635at 729.897 kb on - strand, within LU632_RS03635at 729.897 kb on - strand, within LU632_RS03635at 729.915 kb on - strand, within LU632_RS03635at 729.977 kb on + strandat 729.978 kb on - strandat 730.273 kb on - strand, within LU632_RS03640at 730.322 kb on + strand, within LU632_RS03640at 730.322 kb on + strand, within LU632_RS03640at 730.322 kb on + strand, within LU632_RS03640at 730.323 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.355 kb on - strand, within LU632_RS03640at 730.356 kb on + strand, within LU632_RS03640at 730.477 kb on + strand, within LU632_RS03640at 730.511 kb on - strand, within LU632_RS03640at 730.582 kb on - strand, within LU632_RS03640at 730.584 kb on - strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.587 kb on + strand, within LU632_RS03640at 730.588 kb on - strand, within LU632_RS03640at 730.588 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.592 kb on - strand, within LU632_RS03640at 730.684 kb on + strand, within LU632_RS03640at 730.822 kb on - strand, within LU632_RS03640at 730.854 kb on + strand, within LU632_RS03640at 730.854 kb on + strand, within LU632_RS03640at 730.855 kb on - strand, within LU632_RS03640at 730.857 kb on + strand, within LU632_RS03640at 730.858 kb on - strand, within LU632_RS03640at 730.877 kb on + strand, within LU632_RS03640at 730.877 kb on + strand, within LU632_RS03640at 730.878 kb on - strand, within LU632_RS03640at 730.878 kb on - strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.947 kb on + strand, within LU632_RS03640at 730.958 kb on + strand, within LU632_RS03640at 730.959 kb on - strand, within LU632_RS03640at 730.977 kb on + strand, within LU632_RS03640at 731.026 kb on - strandat 731.049 kb on + strandat 731.062 kb on - strandat 731.062 kb on - strandat 731.065 kb on + strandat 731.136 kb on - strandat 731.145 kb on + strand, within LU632_RS03645at 731.145 kb on + strand, within LU632_RS03645at 731.147 kb on + strand, within LU632_RS03645at 731.151 kb on + strand, within LU632_RS03645at 731.151 kb on + strand, within LU632_RS03645at 731.151 kb on + strand, within LU632_RS03645at 731.151 kb on + strand, within LU632_RS03645at 731.152 kb on - strand, within LU632_RS03645at 731.152 kb on - strand, within LU632_RS03645at 731.301 kb on + strand, within LU632_RS03645at 731.301 kb on + strand, within LU632_RS03645at 731.331 kb on + strand, within LU632_RS03645at 731.331 kb on + strand, within LU632_RS03645at 731.332 kb on - strand, within LU632_RS03645at 731.363 kb on + strand, within LU632_RS03645at 731.379 kb on + strand, within LU632_RS03645at 731.380 kb on - strand, within LU632_RS03645at 731.388 kb on - strand, within LU632_RS03645at 731.418 kb on + strand, within LU632_RS03645at 731.419 kb on - strand, within LU632_RS03645at 731.610 kb on + strand, within LU632_RS03645at 731.610 kb on - strand, within LU632_RS03645at 731.721 kb on + strandat 731.721 kb on + strandat 731.722 kb on - strandat 731.752 kb on + strandat 731.780 kb on + strandat 731.780 kb on + strandat 731.780 kb on + strandat 731.807 kb on - strandat 731.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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729,030 + LU632_RS03630 0.56 -0.2
729,090 + LU632_RS03630 0.63 -0.2
729,247 + LU632_RS03630 0.80 -0.8
729,369 + -1.9
729,397 + -0.7
729,404 + +1.7
729,405 - -1.5
729,408 + +2.0
729,409 - +0.4
729,803 + LU632_RS03635 0.63 -1.2
729,804 - LU632_RS03635 0.63 +1.5
729,896 + LU632_RS03635 0.78 +2.1
729,897 - LU632_RS03635 0.78 -1.5
729,897 - LU632_RS03635 0.78 +4.1
729,915 - LU632_RS03635 0.81 -1.7
729,977 + -0.2
729,978 - -0.7
730,273 - LU632_RS03640 0.23 -0.9
730,322 + LU632_RS03640 0.28 +0.1
730,322 + LU632_RS03640 0.28 +0.5
730,322 + LU632_RS03640 0.28 +0.1
730,323 - LU632_RS03640 0.28 +0.5
730,355 - LU632_RS03640 0.31 -1.0
730,355 - LU632_RS03640 0.31 -0.2
730,355 - LU632_RS03640 0.31 -1.9
730,355 - LU632_RS03640 0.31 -0.6
730,355 - LU632_RS03640 0.31 -0.2
730,355 - LU632_RS03640 0.31 -0.2
730,355 - LU632_RS03640 0.31 -1.3
730,356 + LU632_RS03640 0.31 -0.2
730,477 + LU632_RS03640 0.42 +0.2
730,511 - LU632_RS03640 0.46 -0.4
730,582 - LU632_RS03640 0.52 -0.7
730,584 - LU632_RS03640 0.53 -2.2
730,587 + LU632_RS03640 0.53 +0.2
730,587 + LU632_RS03640 0.53 -1.6
730,587 + LU632_RS03640 0.53 +0.8
730,587 + LU632_RS03640 0.53 -1.1
730,588 - LU632_RS03640 0.53 -1.4
730,588 - LU632_RS03640 0.53 +0.4
730,592 - LU632_RS03640 0.53 -1.2
730,592 - LU632_RS03640 0.53 -0.0
730,592 - LU632_RS03640 0.53 +4.2
730,592 - LU632_RS03640 0.53 -1.4
730,684 + LU632_RS03640 0.62 +0.3
730,822 - LU632_RS03640 0.75 -1.6
730,854 + LU632_RS03640 0.78 -0.2
730,854 + LU632_RS03640 0.78 +1.8
730,855 - LU632_RS03640 0.78 +1.6
730,857 + LU632_RS03640 0.78 +1.1
730,858 - LU632_RS03640 0.78 +3.7
730,877 + LU632_RS03640 0.80 -3.5
730,877 + LU632_RS03640 0.80 -0.7
730,878 - LU632_RS03640 0.80 -0.7
730,878 - LU632_RS03640 0.80 +0.7
730,947 + LU632_RS03640 0.87 -0.6
730,947 + LU632_RS03640 0.87 +1.1
730,947 + LU632_RS03640 0.87 +0.5
730,947 + LU632_RS03640 0.87 -0.1
730,958 + LU632_RS03640 0.88 +0.5
730,959 - LU632_RS03640 0.88 -1.1
730,977 + LU632_RS03640 0.90 -2.0
731,026 - -0.3
731,049 + -0.5
731,062 - +1.6
731,062 - -0.8
731,065 + +1.1
731,136 - -0.2
731,145 + LU632_RS03645 0.10 -0.5
731,145 + LU632_RS03645 0.10 -1.5
731,147 + LU632_RS03645 0.10 +1.1
731,151 + LU632_RS03645 0.11 +0.3
731,151 + LU632_RS03645 0.11 +0.5
731,151 + LU632_RS03645 0.11 -0.2
731,151 + LU632_RS03645 0.11 +1.1
731,152 - LU632_RS03645 0.11 +0.1
731,152 - LU632_RS03645 0.11 -0.4
731,301 + LU632_RS03645 0.36 +0.5
731,301 + LU632_RS03645 0.36 -0.7
731,331 + LU632_RS03645 0.41 -1.8
731,331 + LU632_RS03645 0.41 +0.5
731,332 - LU632_RS03645 0.41 +0.2
731,363 + LU632_RS03645 0.47 -2.4
731,379 + LU632_RS03645 0.49 +0.4
731,380 - LU632_RS03645 0.49 +0.7
731,388 - LU632_RS03645 0.51 -1.6
731,418 + LU632_RS03645 0.56 -0.3
731,419 - LU632_RS03645 0.56 -1.2
731,610 + LU632_RS03645 0.88 +0.3
731,610 - LU632_RS03645 0.88 -0.3
731,721 + +1.1
731,721 + -0.2
731,722 - -0.4
731,752 + -0.2
731,780 + +0.5
731,780 + +1.8
731,780 + -0.1
731,807 - -0.9
731,875 + -1.2

Or see this region's nucleotide sequence