Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03435 and LU632_RS03440 are separated by 396 nucleotides LU632_RS03440 and LU632_RS03445 are separated by 18 nucleotides LU632_RS03445 and LU632_RS03450 are separated by 103 nucleotides
LU632_RS03435: LU632_RS03435 - TOPRIM and DUF927 domain-containing protein, at 700,192 to 702,996
_RS03435
LU632_RS03440: LU632_RS03440 - single-stranded DNA-binding protein, at 703,393 to 703,836
_RS03440
LU632_RS03445: LU632_RS03445 - ProQ/FinO family protein, at 703,855 to 704,322
_RS03445
LU632_RS03450: LU632_RS03450 - hypothetical protein, at 704,426 to 705,979
_RS03450
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 702.949 kb on + strand at 702.949 kb on + strand at 702.950 kb on - strand at 702.962 kb on - strand at 703.083 kb on + strand at 703.343 kb on + strand at 703.347 kb on + strand at 703.347 kb on + strand at 703.347 kb on + strand at 703.348 kb on - strand at 703.348 kb on - strand at 703.348 kb on - strand at 703.349 kb on + strand at 703.349 kb on + strand at 703.350 kb on - strand at 703.351 kb on + strand at 703.351 kb on + strand at 703.406 kb on + strand at 703.414 kb on + strand at 703.491 kb on - strand, within LU632_RS03440 at 703.506 kb on + strand, within LU632_RS03440 at 703.653 kb on + strand, within LU632_RS03440 at 703.654 kb on - strand, within LU632_RS03440 at 703.819 kb on + strand at 703.820 kb on - strand at 703.822 kb on + strand at 703.823 kb on - strand at 703.823 kb on - strand at 703.975 kb on - strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.045 kb on + strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.046 kb on - strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.084 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.101 kb on + strand, within LU632_RS03445 at 704.102 kb on - strand, within LU632_RS03445 at 704.144 kb on - strand, within LU632_RS03445 at 704.176 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.183 kb on + strand, within LU632_RS03445 at 704.447 kb on + strand at 704.448 kb on - strand at 704.522 kb on - strand at 704.562 kb on + strand at 704.566 kb on + strand at 704.640 kb on + strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.641 kb on - strand, within LU632_RS03450 at 704.857 kb on + strand, within LU632_RS03450 at 704.858 kb on - strand, within LU632_RS03450 at 704.858 kb on - strand, within LU632_RS03450 at 704.953 kb on + strand, within LU632_RS03450 at 705.184 kb on - strand, within LU632_RS03450
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 702,949 + -0.6 702,949 + -0.2 702,950 - +3.2 702,962 - -0.0 703,083 + -1.2 703,343 + -0.8 703,347 + +0.4 703,347 + -1.7 703,347 + -1.5 703,348 - -0.6 703,348 - +0.8 703,348 - +0.6 703,349 + -0.1 703,349 + -0.2 703,350 - -0.6 703,351 + -1.7 703,351 + +1.8 703,406 + -0.0 703,414 + -0.2 703,491 - LU632_RS03440 0.22 +1.2 703,506 + LU632_RS03440 0.25 -1.3 703,653 + LU632_RS03440 0.59 -1.5 703,654 - LU632_RS03440 0.59 +0.2 703,819 + -0.2 703,820 - -0.3 703,822 + -0.1 703,823 - -0.4 703,823 - -0.8 703,975 - LU632_RS03445 0.26 +1.2 704,045 + LU632_RS03445 0.41 -0.7 704,045 + LU632_RS03445 0.41 -2.4 704,045 + LU632_RS03445 0.41 +1.2 704,046 - LU632_RS03445 0.41 -1.7 704,046 - LU632_RS03445 0.41 -0.0 704,084 + LU632_RS03445 0.49 -1.6 704,084 + LU632_RS03445 0.49 +0.2 704,101 + LU632_RS03445 0.53 -0.2 704,101 + LU632_RS03445 0.53 +0.2 704,101 + LU632_RS03445 0.53 -1.6 704,101 + LU632_RS03445 0.53 -0.9 704,102 - LU632_RS03445 0.53 -0.8 704,144 - LU632_RS03445 0.62 +0.4 704,176 + LU632_RS03445 0.69 +0.4 704,183 + LU632_RS03445 0.70 +1.5 704,183 + LU632_RS03445 0.70 -1.0 704,447 + +2.1 704,448 - -0.7 704,522 - -1.7 704,562 + -0.3 704,566 + -0.3 704,640 + LU632_RS03450 0.14 +0.9 704,641 - LU632_RS03450 0.14 +1.0 704,641 - LU632_RS03450 0.14 -0.8 704,857 + LU632_RS03450 0.28 -0.0 704,858 - LU632_RS03450 0.28 +0.0 704,858 - LU632_RS03450 0.28 +1.3 704,953 + LU632_RS03450 0.34 +1.2 705,184 - LU632_RS03450 0.49 -0.8
Or see this region's nucleotide sequence