Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03220 and sctL overlap by 7 nucleotides sctL and LU632_RS03230 are separated by 86 nucleotides LU632_RS03230 and LU632_RS03235 overlap by 14 nucleotides LU632_RS03235 and sctC overlap by 8 nucleotides
LU632_RS03220: LU632_RS03220 - hypothetical protein, at 658,242 to 658,832
_RS03220
LU632_RS03225: sctL - type III secretion system stator protein SctL, at 658,826 to 659,410
sctL
LU632_RS03230: LU632_RS03230 - type III secretion system protein, at 659,497 to 659,733
_RS03230
LU632_RS03235: LU632_RS03235 - type III secretion system protein, at 659,720 to 660,151
_RS03235
LU632_RS03240: sctC - type III secretion system outer membrane ring subunit SctC, at 660,144 to 662,168
sctC
Position (kb) 659
660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 658.825 kb on + strand at 658.924 kb on + strand, within sctL at 658.925 kb on - strand, within sctL at 658.925 kb on - strand, within sctL at 658.927 kb on - strand, within sctL at 659.360 kb on + strand at 659.361 kb on - strand at 659.413 kb on - strand at 659.413 kb on - strand at 659.464 kb on - strand at 659.464 kb on - strand at 659.464 kb on - strand at 659.491 kb on - strand at 659.496 kb on + strand at 659.497 kb on - strand at 659.497 kb on - strand at 659.497 kb on - strand at 659.715 kb on + strand at 659.716 kb on - strand at 659.719 kb on - strand at 659.815 kb on - strand, within LU632_RS03235 at 659.872 kb on + strand, within LU632_RS03235 at 659.881 kb on + strand, within LU632_RS03235 at 659.898 kb on + strand, within LU632_RS03235 at 659.898 kb on + strand, within LU632_RS03235 at 659.898 kb on + strand, within LU632_RS03235 at 659.919 kb on + strand, within LU632_RS03235 at 659.919 kb on + strand, within LU632_RS03235 at 659.973 kb on + strand, within LU632_RS03235 at 659.974 kb on - strand, within LU632_RS03235 at 659.974 kb on - strand, within LU632_RS03235 at 659.983 kb on - strand, within LU632_RS03235 at 659.999 kb on - strand, within LU632_RS03235 at 660.127 kb on - strand at 660.130 kb on - strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.158 kb on + strand at 660.159 kb on - strand at 660.159 kb on - strand at 660.253 kb on - strand at 660.258 kb on + strand at 660.272 kb on + strand at 660.289 kb on + strand at 660.450 kb on + strand, within sctC at 660.450 kb on + strand, within sctC at 660.450 kb on + strand, within sctC at 660.451 kb on - strand, within sctC at 660.451 kb on - strand, within sctC at 660.451 kb on - strand, within sctC at 660.615 kb on + strand, within sctC at 660.616 kb on - strand, within sctC at 660.639 kb on - strand, within sctC at 660.696 kb on + strand, within sctC at 660.697 kb on - strand, within sctC at 660.697 kb on - strand, within sctC at 660.697 kb on - strand, within sctC at 660.848 kb on + strand, within sctC at 660.848 kb on + strand, within sctC at 660.849 kb on - strand, within sctC at 660.899 kb on + strand, within sctC at 660.983 kb on - strand, within sctC at 660.985 kb on + strand, within sctC at 661.001 kb on + strand, within sctC at 661.001 kb on + strand, within sctC at 661.001 kb on + strand, within sctC at 661.002 kb on - strand, within sctC at 661.017 kb on + strand, within sctC at 661.028 kb on + strand, within sctC at 661.028 kb on + strand, within sctC at 661.136 kb on - strand, within sctC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 658,825 + -1.5 658,924 + sctL LU632_RS03225 0.17 -1.9 658,925 - sctL LU632_RS03225 0.17 -1.0 658,925 - sctL LU632_RS03225 0.17 +0.2 658,927 - sctL LU632_RS03225 0.17 -3.1 659,360 + -1.8 659,361 - -0.6 659,413 - +0.2 659,413 - +0.2 659,464 - -1.8 659,464 - +0.6 659,464 - -1.6 659,491 - -2.6 659,496 + -2.0 659,497 - +0.0 659,497 - -0.9 659,497 - -1.5 659,715 + -1.5 659,716 - -1.3 659,719 - -0.5 659,815 - LU632_RS03235 0.22 -0.6 659,872 + LU632_RS03235 0.35 -0.4 659,881 + LU632_RS03235 0.37 -0.1 659,898 + LU632_RS03235 0.41 -0.1 659,898 + LU632_RS03235 0.41 +0.2 659,898 + LU632_RS03235 0.41 +0.4 659,919 + LU632_RS03235 0.46 +0.3 659,919 + LU632_RS03235 0.46 -1.1 659,973 + LU632_RS03235 0.59 -0.6 659,974 - LU632_RS03235 0.59 -0.7 659,974 - LU632_RS03235 0.59 +0.1 659,983 - LU632_RS03235 0.61 -1.8 659,999 - LU632_RS03235 0.65 -0.8 660,127 - -2.4 660,130 - -1.2 660,158 + -1.4 660,158 + -2.1 660,158 + -2.1 660,158 + -0.6 660,158 + -1.1 660,159 - -1.9 660,159 - -0.2 660,253 - -1.7 660,258 + -1.9 660,272 + -0.6 660,289 + +0.4 660,450 + sctC LU632_RS03240 0.15 -0.6 660,450 + sctC LU632_RS03240 0.15 -2.3 660,450 + sctC LU632_RS03240 0.15 -1.3 660,451 - sctC LU632_RS03240 0.15 +1.2 660,451 - sctC LU632_RS03240 0.15 +0.8 660,451 - sctC LU632_RS03240 0.15 -0.4 660,615 + sctC LU632_RS03240 0.23 -0.6 660,616 - sctC LU632_RS03240 0.23 -0.1 660,639 - sctC LU632_RS03240 0.24 -1.6 660,696 + sctC LU632_RS03240 0.27 -0.1 660,697 - sctC LU632_RS03240 0.27 -1.4 660,697 - sctC LU632_RS03240 0.27 -3.1 660,697 - sctC LU632_RS03240 0.27 -0.4 660,848 + sctC LU632_RS03240 0.35 -0.1 660,848 + sctC LU632_RS03240 0.35 +0.6 660,849 - sctC LU632_RS03240 0.35 +0.9 660,899 + sctC LU632_RS03240 0.37 -2.2 660,983 - sctC LU632_RS03240 0.41 +0.6 660,985 + sctC LU632_RS03240 0.42 -0.8 661,001 + sctC LU632_RS03240 0.42 -0.6 661,001 + sctC LU632_RS03240 0.42 -1.6 661,001 + sctC LU632_RS03240 0.42 -1.1 661,002 - sctC LU632_RS03240 0.42 -0.8 661,017 + sctC LU632_RS03240 0.43 +0.2 661,028 + sctC LU632_RS03240 0.44 -0.1 661,028 + sctC LU632_RS03240 0.44 -1.0 661,136 - sctC LU632_RS03240 0.49 -1.0
Or see this region's nucleotide sequence