Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03120 and LU632_RS03125 are separated by 321 nucleotides LU632_RS03125 and sctU are separated by 103 nucleotides sctU and sctT overlap by 1 nucleotides sctT and sctS are separated by 1 nucleotides
LU632_RS03120: LU632_RS03120 - acyl-CoA thioesterase, at 640,567 to 640,950
_RS03120
LU632_RS03125: LU632_RS03125 - GNAT family N-acetyltransferase, at 641,272 to 641,721
_RS03125
LU632_RS03130: sctU - type III secretion system export apparatus subunit SctU, at 641,825 to 642,907
sctU
LU632_RS03135: sctT - type III secretion system export apparatus subunit SctT, at 642,907 to 643,704
sctT
LU632_RS03140: sctS - type III secretion system export apparatus subunit SctS, at 643,706 to 643,966
sctS
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 640.845 kb on + strand, within LU632_RS03120 at 640.845 kb on + strand, within LU632_RS03120 at 640.846 kb on - strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.884 kb on - strand, within LU632_RS03120 at 640.935 kb on - strand at 641.010 kb on + strand at 641.039 kb on + strand at 641.056 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.210 kb on - strand at 641.250 kb on + strand at 641.273 kb on + strand at 641.273 kb on + strand at 641.274 kb on - strand at 641.274 kb on - strand at 641.293 kb on + strand at 641.293 kb on + strand at 641.327 kb on + strand, within LU632_RS03125 at 641.328 kb on - strand, within LU632_RS03125 at 641.535 kb on + strand, within LU632_RS03125 at 641.535 kb on + strand, within LU632_RS03125 at 641.580 kb on + strand, within LU632_RS03125 at 641.580 kb on + strand, within LU632_RS03125 at 641.581 kb on - strand, within LU632_RS03125 at 641.593 kb on - strand, within LU632_RS03125 at 641.639 kb on + strand, within LU632_RS03125 at 641.639 kb on + strand, within LU632_RS03125 at 641.639 kb on + strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.640 kb on - strand, within LU632_RS03125 at 641.673 kb on + strand, within LU632_RS03125 at 641.708 kb on - strand at 641.709 kb on + strand at 641.710 kb on - strand at 641.767 kb on + strand at 641.767 kb on + strand at 641.795 kb on + strand at 641.914 kb on + strand at 641.915 kb on - strand at 641.915 kb on - strand at 641.989 kb on + strand, within sctU at 642.015 kb on - strand, within sctU at 642.050 kb on - strand, within sctU at 642.082 kb on - strand, within sctU at 642.084 kb on + strand, within sctU at 642.099 kb on + strand, within sctU at 642.100 kb on - strand, within sctU at 642.176 kb on + strand, within sctU at 642.177 kb on - strand, within sctU at 642.177 kb on - strand, within sctU at 642.318 kb on - strand, within sctU at 642.363 kb on - strand, within sctU at 642.363 kb on - strand, within sctU at 642.365 kb on + strand, within sctU at 642.365 kb on + strand, within sctU at 642.527 kb on - strand, within sctU at 642.538 kb on + strand, within sctU at 642.538 kb on + strand, within sctU at 642.595 kb on - strand, within sctU at 642.600 kb on - strand, within sctU at 642.782 kb on + strand, within sctU at 642.821 kb on - strand at 642.998 kb on + strand, within sctT at 642.998 kb on + strand, within sctT at 642.998 kb on + strand, within sctT at 642.999 kb on - strand, within sctT at 642.999 kb on - strand, within sctT at 643.049 kb on - strand, within sctT at 643.081 kb on + strand, within sctT at 643.140 kb on + strand, within sctT at 643.141 kb on - strand, within sctT at 643.141 kb on - strand, within sctT at 643.143 kb on + strand, within sctT at 643.179 kb on - strand, within sctT at 643.187 kb on - strand, within sctT at 643.239 kb on - strand, within sctT at 643.251 kb on + strand, within sctT at 643.313 kb on - strand, within sctT at 643.432 kb on - strand, within sctT at 643.596 kb on + strand, within sctT at 643.596 kb on + strand, within sctT at 643.677 kb on - strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.707 kb on + strand at 643.708 kb on - strand at 643.799 kb on - strand, within sctS at 643.802 kb on + strand, within sctS at 643.802 kb on + strand, within sctS at 643.862 kb on + strand, within sctS at 643.863 kb on - strand, within sctS
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 640,845 + LU632_RS03120 0.72 -1.5 640,845 + LU632_RS03120 0.72 -0.7 640,846 - LU632_RS03120 0.73 -0.6 640,847 + LU632_RS03120 0.73 -0.1 640,847 + LU632_RS03120 0.73 -1.4 640,847 + LU632_RS03120 0.73 +0.8 640,847 + LU632_RS03120 0.73 -0.8 640,848 - LU632_RS03120 0.73 +0.2 640,848 - LU632_RS03120 0.73 +0.7 640,848 - LU632_RS03120 0.73 -0.2 640,884 - LU632_RS03120 0.83 -1.5 640,935 - +0.9 641,010 + +0.6 641,039 + +0.3 641,056 + -0.1 641,156 + +0.1 641,156 + +0.4 641,156 + -1.0 641,156 + -0.8 641,156 + -1.3 641,156 + -2.3 641,157 - +0.4 641,157 - -0.9 641,157 - +0.4 641,157 - -0.0 641,210 - -0.8 641,250 + -0.4 641,273 + -1.7 641,273 + +0.4 641,274 - +0.2 641,274 - -0.6 641,293 + -1.0 641,293 + +0.2 641,327 + LU632_RS03125 0.12 +1.7 641,328 - LU632_RS03125 0.12 +0.1 641,535 + LU632_RS03125 0.58 +0.0 641,535 + LU632_RS03125 0.58 +0.6 641,580 + LU632_RS03125 0.68 +0.2 641,580 + LU632_RS03125 0.68 -0.4 641,581 - LU632_RS03125 0.69 -0.6 641,593 - LU632_RS03125 0.71 -1.2 641,639 + LU632_RS03125 0.82 +0.9 641,639 + LU632_RS03125 0.82 -1.1 641,639 + LU632_RS03125 0.82 +0.2 641,640 - LU632_RS03125 0.82 +0.3 641,640 - LU632_RS03125 0.82 +0.3 641,640 - LU632_RS03125 0.82 +0.8 641,640 - LU632_RS03125 0.82 +1.6 641,640 - LU632_RS03125 0.82 -0.6 641,640 - LU632_RS03125 0.82 +0.2 641,640 - LU632_RS03125 0.82 +0.8 641,673 + LU632_RS03125 0.89 +0.2 641,708 - -0.4 641,709 + +1.4 641,710 - -0.0 641,767 + -0.1 641,767 + -0.6 641,795 + +0.4 641,914 + +0.6 641,915 - -1.6 641,915 - -1.5 641,989 + sctU LU632_RS03130 0.15 -2.7 642,015 - sctU LU632_RS03130 0.18 -0.4 642,050 - sctU LU632_RS03130 0.21 +2.5 642,082 - sctU LU632_RS03130 0.24 -2.3 642,084 + sctU LU632_RS03130 0.24 -0.7 642,099 + sctU LU632_RS03130 0.25 -1.3 642,100 - sctU LU632_RS03130 0.25 -1.1 642,176 + sctU LU632_RS03130 0.32 +0.1 642,177 - sctU LU632_RS03130 0.33 +1.3 642,177 - sctU LU632_RS03130 0.33 +0.2 642,318 - sctU LU632_RS03130 0.46 -1.8 642,363 - sctU LU632_RS03130 0.50 -0.8 642,363 - sctU LU632_RS03130 0.50 -1.2 642,365 + sctU LU632_RS03130 0.50 -2.2 642,365 + sctU LU632_RS03130 0.50 +0.6 642,527 - sctU LU632_RS03130 0.65 +1.5 642,538 + sctU LU632_RS03130 0.66 -0.3 642,538 + sctU LU632_RS03130 0.66 -1.7 642,595 - sctU LU632_RS03130 0.71 -0.2 642,600 - sctU LU632_RS03130 0.72 -0.4 642,782 + sctU LU632_RS03130 0.88 -1.5 642,821 - +0.2 642,998 + sctT LU632_RS03135 0.11 -1.3 642,998 + sctT LU632_RS03135 0.11 -0.6 642,998 + sctT LU632_RS03135 0.11 -0.8 642,999 - sctT LU632_RS03135 0.12 -0.9 642,999 - sctT LU632_RS03135 0.12 +0.6 643,049 - sctT LU632_RS03135 0.18 -1.1 643,081 + sctT LU632_RS03135 0.22 -1.5 643,140 + sctT LU632_RS03135 0.29 -2.9 643,141 - sctT LU632_RS03135 0.29 -1.5 643,141 - sctT LU632_RS03135 0.29 -0.4 643,143 + sctT LU632_RS03135 0.30 -1.3 643,179 - sctT LU632_RS03135 0.34 -0.9 643,187 - sctT LU632_RS03135 0.35 -0.8 643,239 - sctT LU632_RS03135 0.42 -1.9 643,251 + sctT LU632_RS03135 0.43 -1.9 643,313 - sctT LU632_RS03135 0.51 +0.1 643,432 - sctT LU632_RS03135 0.66 +0.2 643,596 + sctT LU632_RS03135 0.86 -0.6 643,596 + sctT LU632_RS03135 0.86 +0.2 643,677 - -2.0 643,707 + -0.8 643,707 + -1.7 643,707 + +1.2 643,707 + +1.9 643,707 + -1.1 643,708 - +2.2 643,799 - sctS LU632_RS03140 0.36 -1.5 643,802 + sctS LU632_RS03140 0.37 +0.3 643,802 + sctS LU632_RS03140 0.37 -0.1 643,862 + sctS LU632_RS03140 0.60 -1.7 643,863 - sctS LU632_RS03140 0.60 +2.7
Or see this region's nucleotide sequence