Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02720

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlptD and surA are separated by 54 nucleotidessurA and pdxA overlap by 11 nucleotidespdxA and rsmA overlap by 1 nucleotides LU632_RS02715: lptD - LPS assembly protein LptD, at 545,239 to 547,641 lptD LU632_RS02720: surA - peptidylprolyl isomerase SurA, at 547,696 to 548,991 surA LU632_RS02725: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 548,981 to 549,964 pdxA LU632_RS02730: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 549,964 to 550,794 rsmA Position (kb) 547 548 549Strain fitness (log2 ratio) -1 0 1 2 3 4at 547.650 kb on + strandat 547.650 kb on + strandat 549.649 kb on - strand, within pdxAat 549.829 kb on + strand, within pdxAat 549.934 kb on + strandat 549.962 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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547,650 + +0.3
547,650 + +0.4
549,649 - pdxA LU632_RS02725 0.68 +4.3
549,829 + pdxA LU632_RS02725 0.86 +1.3
549,934 + +0.7
549,962 + +1.8

Or see this region's nucleotide sequence