Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and LU632_RS02490 are separated by 140 nucleotides LU632_RS02490 and LU632_RS02495 are separated by 96 nucleotides LU632_RS02495 and LU632_RS02500 are separated by 245 nucleotides
LU632_RS02485: osmY - molecular chaperone OsmY, at 494,105 to 494,719
osmY
LU632_RS02490: LU632_RS02490 - DUF1328 domain-containing protein, at 494,860 to 495,021
_RS02490
LU632_RS02495: LU632_RS02495 - IS256 family transposase, at 495,118 to 496,326
_RS02495
LU632_RS02500: LU632_RS02500 - DDE-type integrase/transposase/recombinase, at 496,572 to 497,194
_RS02500
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 494.134 kb on + strand at 494.135 kb on - strand at 494.142 kb on + strand at 494.143 kb on - strand at 494.171 kb on + strand, within osmY at 494.188 kb on + strand, within osmY at 494.212 kb on + strand, within osmY at 494.329 kb on + strand, within osmY at 494.330 kb on - strand, within osmY at 494.342 kb on - strand, within osmY at 494.497 kb on - strand, within osmY at 494.542 kb on + strand, within osmY at 494.542 kb on + strand, within osmY at 494.543 kb on - strand, within osmY at 494.543 kb on - strand, within osmY at 494.575 kb on + strand, within osmY at 494.702 kb on - strand at 494.772 kb on - strand at 494.772 kb on - strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.787 kb on - strand at 494.860 kb on - strand at 494.934 kb on + strand, within LU632_RS02490 at 494.976 kb on + strand, within LU632_RS02490 at 494.977 kb on - strand, within LU632_RS02490 at 495.350 kb on + strand, within LU632_RS02495 at 495.350 kb on + strand, within LU632_RS02495 at 496.038 kb on - strand, within LU632_RS02495 at 496.352 kb on + strand at 496.352 kb on + strand at 496.433 kb on + strand at 496.434 kb on - strand at 496.434 kb on - strand at 496.435 kb on + strand at 496.435 kb on + strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.511 kb on + strand at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.709 kb on - strand, within LU632_RS02500 at 496.979 kb on - strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.053 kb on - strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.085 kb on + strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.161 kb on - strand at 497.177 kb on + strand at 497.191 kb on + strand at 497.222 kb on + strand at 497.223 kb on - strand at 497.253 kb on - strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 494,134 + +2.0 494,135 - -0.5 494,142 + +1.0 494,143 - +0.2 494,171 + osmY LU632_RS02485 0.11 -0.1 494,188 + osmY LU632_RS02485 0.13 +0.2 494,212 + osmY LU632_RS02485 0.17 -0.1 494,329 + osmY LU632_RS02485 0.36 -0.1 494,330 - osmY LU632_RS02485 0.37 +1.0 494,342 - osmY LU632_RS02485 0.39 +2.1 494,497 - osmY LU632_RS02485 0.64 -0.9 494,542 + osmY LU632_RS02485 0.71 -0.6 494,542 + osmY LU632_RS02485 0.71 +0.2 494,543 - osmY LU632_RS02485 0.71 -0.8 494,543 - osmY LU632_RS02485 0.71 -0.4 494,575 + osmY LU632_RS02485 0.76 +0.2 494,702 - +0.4 494,772 - -0.1 494,772 - +0.1 494,781 + +3.1 494,782 - -0.3 494,782 - +1.9 494,787 - +0.6 494,860 - +1.4 494,934 + LU632_RS02490 0.46 +0.1 494,976 + LU632_RS02490 0.72 -0.5 494,977 - LU632_RS02490 0.72 +0.4 495,350 + LU632_RS02495 0.19 +0.7 495,350 + LU632_RS02495 0.19 -1.3 496,038 - LU632_RS02495 0.76 +0.9 496,352 + +0.6 496,352 + +1.3 496,433 + -2.2 496,434 - -0.2 496,434 - -0.8 496,435 + -0.4 496,435 + -0.8 496,436 - -1.5 496,436 - -0.8 496,436 - -0.4 496,436 - -0.4 496,511 + +0.1 496,689 + LU632_RS02500 0.19 -0.1 496,689 + LU632_RS02500 0.19 +0.2 496,689 + LU632_RS02500 0.19 +0.4 496,689 + LU632_RS02500 0.19 +0.1 496,689 + LU632_RS02500 0.19 -0.6 496,690 - LU632_RS02500 0.19 -0.9 496,690 - LU632_RS02500 0.19 -1.5 496,690 - LU632_RS02500 0.19 +2.6 496,690 - LU632_RS02500 0.19 +0.0 496,690 - LU632_RS02500 0.19 -1.2 496,709 - LU632_RS02500 0.22 -1.1 496,979 - LU632_RS02500 0.65 +0.9 497,052 + LU632_RS02500 0.77 +2.2 497,052 + LU632_RS02500 0.77 -0.1 497,052 + LU632_RS02500 0.77 -1.1 497,053 - LU632_RS02500 0.77 -2.7 497,083 + LU632_RS02500 0.82 +2.3 497,083 + LU632_RS02500 0.82 -1.3 497,083 + LU632_RS02500 0.82 +1.6 497,084 - LU632_RS02500 0.82 +0.1 497,084 - LU632_RS02500 0.82 -0.3 497,084 - LU632_RS02500 0.82 -0.6 497,085 + LU632_RS02500 0.82 +1.6 497,086 - LU632_RS02500 0.83 -0.9 497,086 - LU632_RS02500 0.83 +0.5 497,086 - LU632_RS02500 0.83 -2.6 497,160 + -1.1 497,160 + +0.6 497,160 + +0.1 497,160 + -1.1 497,161 - +0.6 497,177 + -2.3 497,191 + +1.6 497,222 + +1.1 497,223 - -1.5 497,253 - +0.4 497,299 + +0.6 497,299 + +0.2 497,299 + -1.1 497,300 - -0.6
Or see this region's nucleotide sequence