Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02435

Experiment: plant=Melon; plant sample=M4; plant location=P2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS02425 and LU632_RS02430 are separated by 165 nucleotidesLU632_RS02430 and LU632_RS02435 are separated by 254 nucleotidesLU632_RS02435 and LU632_RS02440 overlap by 8 nucleotidesLU632_RS02440 and LU632_RS02445 overlap by 8 nucleotides LU632_RS02425: LU632_RS02425 - terminase family protein, at 484,482 to 485,060 _RS02425 LU632_RS02430: LU632_RS02430 - ISNCY family transposase, at 485,226 to 485,511 _RS02430 LU632_RS02435: LU632_RS02435 - ABC transporter substrate-binding protein, at 485,766 to 486,785 _RS02435 LU632_RS02440: LU632_RS02440 - ABC transporter ATP-binding protein, at 486,778 to 487,590 _RS02440 LU632_RS02445: LU632_RS02445 - ABC transporter permease, at 487,583 to 488,419 _RS02445 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2 3at 484.966 kb on + strand, within LU632_RS02425at 484.998 kb on + strand, within LU632_RS02425at 484.998 kb on + strand, within LU632_RS02425at 484.998 kb on + strand, within LU632_RS02425at 484.998 kb on + strand, within LU632_RS02425at 485.000 kb on + strand, within LU632_RS02425at 485.224 kb on + strandat 485.224 kb on + strandat 485.224 kb on + strandat 485.224 kb on + strandat 485.225 kb on - strandat 485.309 kb on + strand, within LU632_RS02430at 485.309 kb on + strand, within LU632_RS02430at 485.309 kb on + strand, within LU632_RS02430at 485.310 kb on - strand, within LU632_RS02430at 485.412 kb on + strand, within LU632_RS02430at 485.437 kb on - strand, within LU632_RS02430at 485.443 kb on - strand, within LU632_RS02430at 485.461 kb on - strand, within LU632_RS02430at 485.469 kb on + strand, within LU632_RS02430at 485.563 kb on + strandat 485.563 kb on + strandat 485.564 kb on - strandat 485.584 kb on + strandat 485.627 kb on - strandat 485.639 kb on - strandat 485.700 kb on - strandat 485.701 kb on + strandat 485.736 kb on + strandat 485.803 kb on + strandat 485.888 kb on - strand, within LU632_RS02435at 485.888 kb on - strand, within LU632_RS02435at 485.890 kb on - strand, within LU632_RS02435at 485.890 kb on - strand, within LU632_RS02435at 485.930 kb on + strand, within LU632_RS02435at 486.038 kb on + strand, within LU632_RS02435at 486.039 kb on - strand, within LU632_RS02435at 486.039 kb on - strand, within LU632_RS02435at 486.039 kb on - strand, within LU632_RS02435at 486.045 kb on - strand, within LU632_RS02435at 486.049 kb on + strand, within LU632_RS02435at 486.066 kb on + strand, within LU632_RS02435at 486.068 kb on + strand, within LU632_RS02435at 486.068 kb on + strand, within LU632_RS02435at 486.068 kb on + strand, within LU632_RS02435at 486.068 kb on + strand, within LU632_RS02435at 486.167 kb on + strand, within LU632_RS02435at 486.218 kb on + strand, within LU632_RS02435at 486.219 kb on - strand, within LU632_RS02435at 486.219 kb on - strand, within LU632_RS02435at 486.223 kb on + strand, within LU632_RS02435at 486.224 kb on - strand, within LU632_RS02435at 486.314 kb on + strand, within LU632_RS02435at 486.314 kb on + strand, within LU632_RS02435at 486.315 kb on - strand, within LU632_RS02435at 486.315 kb on - strand, within LU632_RS02435at 486.315 kb on - strand, within LU632_RS02435at 486.366 kb on - strand, within LU632_RS02435at 486.374 kb on + strand, within LU632_RS02435at 486.377 kb on + strand, within LU632_RS02435at 486.377 kb on + strand, within LU632_RS02435at 486.377 kb on + strand, within LU632_RS02435at 486.499 kb on + strand, within LU632_RS02435at 486.523 kb on + strand, within LU632_RS02435at 486.618 kb on - strand, within LU632_RS02435at 486.618 kb on - strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.625 kb on + strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.626 kb on - strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.635 kb on + strand, within LU632_RS02435at 486.636 kb on - strand, within LU632_RS02435at 486.656 kb on + strand, within LU632_RS02435at 486.791 kb on + strandat 486.792 kb on - strandat 486.814 kb on + strandat 486.814 kb on + strandat 486.815 kb on - strandat 486.854 kb on + strandat 486.854 kb on + strandat 486.925 kb on - strand, within LU632_RS02440at 487.012 kb on - strand, within LU632_RS02440at 487.012 kb on - strand, within LU632_RS02440at 487.012 kb on - strand, within LU632_RS02440at 487.027 kb on + strand, within LU632_RS02440at 487.030 kb on - strand, within LU632_RS02440at 487.030 kb on - strand, within LU632_RS02440at 487.047 kb on - strand, within LU632_RS02440at 487.160 kb on + strand, within LU632_RS02440at 487.177 kb on + strand, within LU632_RS02440at 487.178 kb on - strand, within LU632_RS02440at 487.325 kb on + strand, within LU632_RS02440at 487.352 kb on + strand, within LU632_RS02440at 487.353 kb on - strand, within LU632_RS02440at 487.353 kb on - strand, within LU632_RS02440at 487.353 kb on - strand, within LU632_RS02440at 487.439 kb on + strand, within LU632_RS02440at 487.439 kb on + strand, within LU632_RS02440at 487.479 kb on - strand, within LU632_RS02440at 487.514 kb on + strandat 487.515 kb on - strandat 487.515 kb on - strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.518 kb on + strandat 487.519 kb on - strandat 487.519 kb on - strandat 487.536 kb on - strandat 487.551 kb on - strandat 487.569 kb on + strandat 487.569 kb on + strandat 487.569 kb on + strandat 487.624 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
remove
484,966 + LU632_RS02425 0.84 +2.7
484,998 + LU632_RS02425 0.89 -0.0
484,998 + LU632_RS02425 0.89 +1.1
484,998 + LU632_RS02425 0.89 -0.6
484,998 + LU632_RS02425 0.89 -0.1
485,000 + LU632_RS02425 0.89 +0.3
485,224 + -0.5
485,224 + +0.9
485,224 + +0.7
485,224 + -0.5
485,225 - -0.4
485,309 + LU632_RS02430 0.29 -0.6
485,309 + LU632_RS02430 0.29 +1.0
485,309 + LU632_RS02430 0.29 -1.4
485,310 - LU632_RS02430 0.29 +0.5
485,412 + LU632_RS02430 0.65 -0.1
485,437 - LU632_RS02430 0.74 -0.9
485,443 - LU632_RS02430 0.76 +1.3
485,461 - LU632_RS02430 0.82 +2.5
485,469 + LU632_RS02430 0.85 -0.1
485,563 + -0.3
485,563 + +0.1
485,564 - +0.3
485,584 + +0.3
485,627 - -0.4
485,639 - +0.5
485,700 - -0.4
485,701 + -0.3
485,736 + -0.9
485,803 + +1.3
485,888 - LU632_RS02435 0.12 +0.9
485,888 - LU632_RS02435 0.12 -0.7
485,890 - LU632_RS02435 0.12 +2.1
485,890 - LU632_RS02435 0.12 +0.7
485,930 + LU632_RS02435 0.16 -0.6
486,038 + LU632_RS02435 0.27 -0.7
486,039 - LU632_RS02435 0.27 +0.3
486,039 - LU632_RS02435 0.27 +1.2
486,039 - LU632_RS02435 0.27 +0.4
486,045 - LU632_RS02435 0.27 +0.8
486,049 + LU632_RS02435 0.28 -0.4
486,066 + LU632_RS02435 0.29 +0.4
486,068 + LU632_RS02435 0.30 +0.0
486,068 + LU632_RS02435 0.30 -1.1
486,068 + LU632_RS02435 0.30 +0.7
486,068 + LU632_RS02435 0.30 -1.3
486,167 + LU632_RS02435 0.39 -2.7
486,218 + LU632_RS02435 0.44 +1.1
486,219 - LU632_RS02435 0.44 +0.2
486,219 - LU632_RS02435 0.44 -0.9
486,223 + LU632_RS02435 0.45 -0.8
486,224 - LU632_RS02435 0.45 -0.4
486,314 + LU632_RS02435 0.54 +1.2
486,314 + LU632_RS02435 0.54 +0.3
486,315 - LU632_RS02435 0.54 +0.6
486,315 - LU632_RS02435 0.54 +1.7
486,315 - LU632_RS02435 0.54 -0.9
486,366 - LU632_RS02435 0.59 -0.3
486,374 + LU632_RS02435 0.60 -1.1
486,377 + LU632_RS02435 0.60 -0.2
486,377 + LU632_RS02435 0.60 +1.7
486,377 + LU632_RS02435 0.60 -1.4
486,499 + LU632_RS02435 0.72 -0.1
486,523 + LU632_RS02435 0.74 +0.2
486,618 - LU632_RS02435 0.84 +1.3
486,618 - LU632_RS02435 0.84 +0.7
486,625 + LU632_RS02435 0.84 +1.7
486,625 + LU632_RS02435 0.84 +0.4
486,625 + LU632_RS02435 0.84 +0.4
486,625 + LU632_RS02435 0.84 +0.7
486,625 + LU632_RS02435 0.84 -0.0
486,626 - LU632_RS02435 0.84 +0.7
486,626 - LU632_RS02435 0.84 +1.3
486,626 - LU632_RS02435 0.84 -0.7
486,626 - LU632_RS02435 0.84 +0.7
486,626 - LU632_RS02435 0.84 -0.6
486,626 - LU632_RS02435 0.84 -1.3
486,626 - LU632_RS02435 0.84 +1.1
486,626 - LU632_RS02435 0.84 +1.9
486,635 + LU632_RS02435 0.85 +0.7
486,635 + LU632_RS02435 0.85 -1.2
486,635 + LU632_RS02435 0.85 +0.8
486,635 + LU632_RS02435 0.85 -1.0
486,636 - LU632_RS02435 0.85 +0.3
486,656 + LU632_RS02435 0.87 +0.2
486,791 + -0.3
486,792 - -0.1
486,814 + +1.6
486,814 + -0.0
486,815 - +0.7
486,854 + +0.3
486,854 + -0.4
486,925 - LU632_RS02440 0.18 +1.2
487,012 - LU632_RS02440 0.29 +0.7
487,012 - LU632_RS02440 0.29 +0.1
487,012 - LU632_RS02440 0.29 +3.1
487,027 + LU632_RS02440 0.31 +0.4
487,030 - LU632_RS02440 0.31 -0.4
487,030 - LU632_RS02440 0.31 -0.9
487,047 - LU632_RS02440 0.33 +0.7
487,160 + LU632_RS02440 0.47 +1.4
487,177 + LU632_RS02440 0.49 +0.7
487,178 - LU632_RS02440 0.49 +0.8
487,325 + LU632_RS02440 0.67 -2.0
487,352 + LU632_RS02440 0.71 -2.3
487,353 - LU632_RS02440 0.71 -1.2
487,353 - LU632_RS02440 0.71 +0.1
487,353 - LU632_RS02440 0.71 -0.2
487,439 + LU632_RS02440 0.81 +0.3
487,439 + LU632_RS02440 0.81 +0.1
487,479 - LU632_RS02440 0.86 -0.1
487,514 + -0.2
487,515 - -0.4
487,515 - -0.1
487,518 + +0.4
487,518 + -0.3
487,518 + -0.6
487,518 + -0.8
487,518 + -0.6
487,519 - -0.1
487,519 - -1.1
487,536 - +1.1
487,551 - +0.5
487,569 + -0.7
487,569 + +0.7
487,569 + +0.4
487,624 - -0.6

Or see this region's nucleotide sequence