Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmG and LU632_RS02340 are separated by 29 nucleotides LU632_RS02340 and LU632_RS02345 are separated by 242 nucleotides
LU632_RS02335: rlmG - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 458,198 to 459,325
rlmG
LU632_RS02340: LU632_RS02340 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 459,355 to 460,446
_RS02340
LU632_RS02345: LU632_RS02345 - TIM barrel protein, at 460,689 to 461,486
_RS02345
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 458.400 kb on - strand, within rlmG at 458.400 kb on - strand, within rlmG at 458.635 kb on + strand, within rlmG at 458.641 kb on + strand, within rlmG at 458.641 kb on + strand, within rlmG at 458.642 kb on - strand, within rlmG at 458.642 kb on - strand, within rlmG at 458.642 kb on - strand, within rlmG at 458.652 kb on + strand, within rlmG at 458.652 kb on + strand, within rlmG at 458.673 kb on + strand, within rlmG at 458.674 kb on - strand, within rlmG at 458.723 kb on - strand, within rlmG at 458.881 kb on - strand, within rlmG at 459.236 kb on + strand at 459.300 kb on + strand at 459.301 kb on - strand at 459.332 kb on - strand at 459.439 kb on - strand at 459.505 kb on + strand, within LU632_RS02340 at 459.505 kb on + strand, within LU632_RS02340 at 459.515 kb on - strand, within LU632_RS02340 at 459.602 kb on - strand, within LU632_RS02340 at 459.623 kb on + strand, within LU632_RS02340 at 459.623 kb on + strand, within LU632_RS02340 at 459.623 kb on + strand, within LU632_RS02340 at 459.624 kb on - strand, within LU632_RS02340 at 459.624 kb on - strand, within LU632_RS02340 at 459.649 kb on + strand, within LU632_RS02340 at 459.794 kb on - strand, within LU632_RS02340 at 459.794 kb on - strand, within LU632_RS02340 at 459.810 kb on + strand, within LU632_RS02340 at 459.811 kb on - strand, within LU632_RS02340 at 459.811 kb on - strand, within LU632_RS02340 at 459.859 kb on - strand, within LU632_RS02340 at 459.969 kb on + strand, within LU632_RS02340 at 459.971 kb on - strand, within LU632_RS02340 at 459.971 kb on - strand, within LU632_RS02340 at 459.974 kb on + strand, within LU632_RS02340 at 460.153 kb on + strand, within LU632_RS02340 at 460.249 kb on - strand, within LU632_RS02340 at 460.273 kb on + strand, within LU632_RS02340 at 460.398 kb on + strand at 460.398 kb on + strand at 460.399 kb on - strand at 460.399 kb on - strand at 460.399 kb on - strand at 460.399 kb on - strand at 460.399 kb on - strand at 460.399 kb on - strand at 460.399 kb on - strand at 460.471 kb on - strand at 460.543 kb on + strand at 460.543 kb on + strand at 460.544 kb on - strand at 460.544 kb on - strand at 460.556 kb on - strand at 460.646 kb on + strand at 460.646 kb on + strand at 460.646 kb on + strand at 460.647 kb on - strand at 460.684 kb on - strand at 460.707 kb on + strand at 460.713 kb on + strand at 460.713 kb on + strand at 460.714 kb on - strand at 460.789 kb on + strand, within LU632_RS02345 at 460.789 kb on + strand, within LU632_RS02345 at 460.790 kb on - strand, within LU632_RS02345 at 460.790 kb on - strand, within LU632_RS02345 at 460.791 kb on + strand, within LU632_RS02345 at 460.792 kb on - strand, within LU632_RS02345 at 460.865 kb on + strand, within LU632_RS02345 at 460.866 kb on - strand, within LU632_RS02345 at 460.866 kb on - strand, within LU632_RS02345 at 460.866 kb on - strand, within LU632_RS02345 at 460.947 kb on - strand, within LU632_RS02345 at 460.950 kb on + strand, within LU632_RS02345 at 460.950 kb on + strand, within LU632_RS02345 at 460.951 kb on - strand, within LU632_RS02345 at 460.982 kb on - strand, within LU632_RS02345 at 461.016 kb on - strand, within LU632_RS02345 at 461.041 kb on - strand, within LU632_RS02345 at 461.041 kb on - strand, within LU632_RS02345 at 461.041 kb on - strand, within LU632_RS02345 at 461.041 kb on - strand, within LU632_RS02345 at 461.041 kb on - strand, within LU632_RS02345 at 461.109 kb on + strand, within LU632_RS02345 at 461.288 kb on + strand, within LU632_RS02345 at 461.289 kb on - strand, within LU632_RS02345 at 461.364 kb on - strand, within LU632_RS02345 at 461.384 kb on + strand, within LU632_RS02345 at 461.397 kb on + strand, within LU632_RS02345 at 461.397 kb on + strand, within LU632_RS02345 at 461.398 kb on - strand, within LU632_RS02345 at 461.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 458,400 - rlmG LU632_RS02335 0.18 -0.5 458,400 - rlmG LU632_RS02335 0.18 -0.4 458,635 + rlmG LU632_RS02335 0.39 -0.9 458,641 + rlmG LU632_RS02335 0.39 -0.2 458,641 + rlmG LU632_RS02335 0.39 +0.7 458,642 - rlmG LU632_RS02335 0.39 +0.7 458,642 - rlmG LU632_RS02335 0.39 -0.3 458,642 - rlmG LU632_RS02335 0.39 +1.2 458,652 + rlmG LU632_RS02335 0.40 -1.3 458,652 + rlmG LU632_RS02335 0.40 -0.7 458,673 + rlmG LU632_RS02335 0.42 -1.2 458,674 - rlmG LU632_RS02335 0.42 -0.6 458,723 - rlmG LU632_RS02335 0.47 -2.4 458,881 - rlmG LU632_RS02335 0.61 -1.8 459,236 + -1.0 459,300 + -0.3 459,301 - -0.9 459,332 - +0.3 459,439 - +0.3 459,505 + LU632_RS02340 0.14 +0.5 459,505 + LU632_RS02340 0.14 +0.8 459,515 - LU632_RS02340 0.15 -0.9 459,602 - LU632_RS02340 0.23 +2.4 459,623 + LU632_RS02340 0.25 +0.7 459,623 + LU632_RS02340 0.25 -1.3 459,623 + LU632_RS02340 0.25 -0.3 459,624 - LU632_RS02340 0.25 +0.1 459,624 - LU632_RS02340 0.25 -1.1 459,649 + LU632_RS02340 0.27 +1.3 459,794 - LU632_RS02340 0.40 -0.1 459,794 - LU632_RS02340 0.40 -0.7 459,810 + LU632_RS02340 0.42 +0.3 459,811 - LU632_RS02340 0.42 +1.8 459,811 - LU632_RS02340 0.42 -0.7 459,859 - LU632_RS02340 0.46 +1.4 459,969 + LU632_RS02340 0.56 -1.1 459,971 - LU632_RS02340 0.56 +0.0 459,971 - LU632_RS02340 0.56 -0.1 459,974 + LU632_RS02340 0.57 -0.8 460,153 + LU632_RS02340 0.73 -1.9 460,249 - LU632_RS02340 0.82 +1.7 460,273 + LU632_RS02340 0.84 -1.7 460,398 + +0.4 460,398 + -0.1 460,399 - +0.4 460,399 - +1.3 460,399 - -1.7 460,399 - +0.4 460,399 - +0.3 460,399 - +0.4 460,399 - -1.3 460,471 - +1.6 460,543 + -0.1 460,543 + +0.6 460,544 - +1.4 460,544 - -1.1 460,556 - -0.9 460,646 + +0.2 460,646 + +2.3 460,646 + -0.3 460,647 - +0.3 460,684 - +0.1 460,707 + +1.9 460,713 + +0.5 460,713 + -0.2 460,714 - +0.5 460,789 + LU632_RS02345 0.13 +0.0 460,789 + LU632_RS02345 0.13 -0.1 460,790 - LU632_RS02345 0.13 -0.2 460,790 - LU632_RS02345 0.13 -0.7 460,791 + LU632_RS02345 0.13 +0.6 460,792 - LU632_RS02345 0.13 +1.7 460,865 + LU632_RS02345 0.22 +0.3 460,866 - LU632_RS02345 0.22 -0.5 460,866 - LU632_RS02345 0.22 +2.3 460,866 - LU632_RS02345 0.22 -1.2 460,947 - LU632_RS02345 0.32 +1.3 460,950 + LU632_RS02345 0.33 +1.5 460,950 + LU632_RS02345 0.33 +9.5 460,951 - LU632_RS02345 0.33 +1.7 460,982 - LU632_RS02345 0.37 +0.1 461,016 - LU632_RS02345 0.41 +1.2 461,041 - LU632_RS02345 0.44 -1.8 461,041 - LU632_RS02345 0.44 +0.3 461,041 - LU632_RS02345 0.44 -1.1 461,041 - LU632_RS02345 0.44 -0.6 461,041 - LU632_RS02345 0.44 +1.7 461,109 + LU632_RS02345 0.53 +0.8 461,288 + LU632_RS02345 0.75 -1.6 461,289 - LU632_RS02345 0.75 +0.7 461,364 - LU632_RS02345 0.85 -1.9 461,384 + LU632_RS02345 0.87 -0.9 461,397 + LU632_RS02345 0.89 +1.3 461,397 + LU632_RS02345 0.89 -1.3 461,398 - LU632_RS02345 0.89 -0.1 461,415 - +0.4
Or see this region's nucleotide sequence