Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01670

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01660 and LU632_RS01665 overlap by 1 nucleotidesLU632_RS01665 and LU632_RS01670 are separated by 154 nucleotidesLU632_RS01670 and LU632_RS01675 are separated by 12 nucleotides LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247 _RS01660 LU632_RS01665: LU632_RS01665 - tail fiber assembly protein, at 328,247 to 328,843 _RS01665 LU632_RS01670: LU632_RS01670 - phage tail protein, at 328,998 to 329,486 _RS01670 LU632_RS01675: LU632_RS01675 - phage tail tape measure protein, at 329,499 to 332,471 _RS01675 Position (kb) 328 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 328.305 kb on + strandat 328.393 kb on + strand, within LU632_RS01665at 328.394 kb on - strand, within LU632_RS01665at 328.394 kb on - strand, within LU632_RS01665at 328.394 kb on - strand, within LU632_RS01665at 328.464 kb on - strand, within LU632_RS01665at 328.493 kb on + strand, within LU632_RS01665at 328.494 kb on - strand, within LU632_RS01665at 328.494 kb on - strand, within LU632_RS01665at 328.525 kb on + strand, within LU632_RS01665at 328.581 kb on - strand, within LU632_RS01665at 328.585 kb on + strand, within LU632_RS01665at 328.586 kb on - strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.716 kb on + strand, within LU632_RS01665at 328.717 kb on - strand, within LU632_RS01665at 328.722 kb on + strand, within LU632_RS01665at 328.723 kb on - strand, within LU632_RS01665at 328.772 kb on + strand, within LU632_RS01665at 328.776 kb on + strand, within LU632_RS01665at 328.776 kb on + strand, within LU632_RS01665at 328.776 kb on + strand, within LU632_RS01665at 328.777 kb on - strand, within LU632_RS01665at 328.842 kb on - strandat 328.842 kb on - strandat 328.893 kb on - strandat 328.899 kb on + strandat 328.925 kb on + strandat 328.935 kb on + strandat 328.985 kb on + strandat 328.985 kb on + strandat 329.035 kb on + strandat 329.106 kb on + strand, within LU632_RS01670at 329.206 kb on - strand, within LU632_RS01670at 329.206 kb on - strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.209 kb on + strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.210 kb on - strand, within LU632_RS01670at 329.264 kb on - strand, within LU632_RS01670at 329.264 kb on - strand, within LU632_RS01670at 329.362 kb on + strand, within LU632_RS01670at 329.362 kb on + strand, within LU632_RS01670at 329.363 kb on - strand, within LU632_RS01670at 329.363 kb on - strand, within LU632_RS01670at 329.363 kb on - strand, within LU632_RS01670at 329.622 kb on + strandat 329.622 kb on + strandat 329.623 kb on - strandat 329.623 kb on - strandat 329.664 kb on - strandat 329.664 kb on - strandat 329.754 kb on - strandat 329.879 kb on + strand, within LU632_RS01675at 330.022 kb on - strand, within LU632_RS01675at 330.123 kb on + strand, within LU632_RS01675at 330.124 kb on - strand, within LU632_RS01675at 330.124 kb on - strand, within LU632_RS01675at 330.129 kb on - strand, within LU632_RS01675at 330.252 kb on + strand, within LU632_RS01675at 330.369 kb on + strand, within LU632_RS01675at 330.369 kb on + strand, within LU632_RS01675at 330.369 kb on + strand, within LU632_RS01675at 330.369 kb on + strand, within LU632_RS01675at 330.369 kb on + strand, within LU632_RS01675at 330.370 kb on - strand, within LU632_RS01675at 330.370 kb on - strand, within LU632_RS01675

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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328,305 + -1.8
328,393 + LU632_RS01665 0.24 -0.8
328,394 - LU632_RS01665 0.25 -3.5
328,394 - LU632_RS01665 0.25 -0.3
328,394 - LU632_RS01665 0.25 +0.0
328,464 - LU632_RS01665 0.36 -2.7
328,493 + LU632_RS01665 0.41 -0.2
328,494 - LU632_RS01665 0.41 +0.3
328,494 - LU632_RS01665 0.41 +0.2
328,525 + LU632_RS01665 0.47 +0.0
328,581 - LU632_RS01665 0.56 +0.1
328,585 + LU632_RS01665 0.57 +0.4
328,586 - LU632_RS01665 0.57 +0.9
328,716 + LU632_RS01665 0.79 -0.1
328,716 + LU632_RS01665 0.79 -1.3
328,716 + LU632_RS01665 0.79 +1.0
328,716 + LU632_RS01665 0.79 -1.3
328,717 - LU632_RS01665 0.79 -0.2
328,722 + LU632_RS01665 0.80 +0.1
328,723 - LU632_RS01665 0.80 +0.8
328,772 + LU632_RS01665 0.88 -0.6
328,776 + LU632_RS01665 0.89 -0.9
328,776 + LU632_RS01665 0.89 -0.1
328,776 + LU632_RS01665 0.89 -0.1
328,777 - LU632_RS01665 0.89 -0.6
328,842 - -0.3
328,842 - -0.1
328,893 - +1.1
328,899 + -1.4
328,925 + -0.7
328,935 + +1.0
328,985 + -1.0
328,985 + -1.7
329,035 + -0.8
329,106 + LU632_RS01670 0.22 -0.3
329,206 - LU632_RS01670 0.43 +0.2
329,206 - LU632_RS01670 0.43 +0.8
329,209 + LU632_RS01670 0.43 +0.2
329,209 + LU632_RS01670 0.43 +4.4
329,209 + LU632_RS01670 0.43 -2.3
329,209 + LU632_RS01670 0.43 -1.1
329,210 - LU632_RS01670 0.43 +1.2
329,210 - LU632_RS01670 0.43 -0.8
329,210 - LU632_RS01670 0.43 -0.3
329,210 - LU632_RS01670 0.43 +0.2
329,210 - LU632_RS01670 0.43 +0.7
329,264 - LU632_RS01670 0.54 -1.7
329,264 - LU632_RS01670 0.54 +0.1
329,362 + LU632_RS01670 0.74 +1.9
329,362 + LU632_RS01670 0.74 -0.4
329,363 - LU632_RS01670 0.75 +0.4
329,363 - LU632_RS01670 0.75 +2.0
329,363 - LU632_RS01670 0.75 +0.7
329,622 + +0.2
329,622 + +0.9
329,623 - -0.1
329,623 - -2.6
329,664 - +1.1
329,664 - -0.4
329,754 - -0.1
329,879 + LU632_RS01675 0.13 +1.2
330,022 - LU632_RS01675 0.18 +2.1
330,123 + LU632_RS01675 0.21 -1.3
330,124 - LU632_RS01675 0.21 -0.6
330,124 - LU632_RS01675 0.21 +0.4
330,129 - LU632_RS01675 0.21 -0.5
330,252 + LU632_RS01675 0.25 +0.5
330,369 + LU632_RS01675 0.29 +0.7
330,369 + LU632_RS01675 0.29 -0.3
330,369 + LU632_RS01675 0.29 +1.1
330,369 + LU632_RS01675 0.29 -0.9
330,369 + LU632_RS01675 0.29 -0.3
330,370 - LU632_RS01675 0.29 +0.0
330,370 - LU632_RS01675 0.29 +1.2

Or see this region's nucleotide sequence