Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01650 and LU632_RS01655 overlap by 8 nucleotides LU632_RS01655 and LU632_RS01660 overlap by 11 nucleotides LU632_RS01660 and LU632_RS01665 overlap by 1 nucleotides LU632_RS01665 and LU632_RS01670 are separated by 154 nucleotides
LU632_RS01650: LU632_RS01650 - baseplate J/gp47 family protein, at 325,753 to 326,649
_RS01650
LU632_RS01655: LU632_RS01655 - phage tail protein I, at 326,642 to 327,256
_RS01655
LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247
_RS01660
LU632_RS01665: LU632_RS01665 - tail fiber assembly protein, at 328,247 to 328,843
_RS01665
LU632_RS01670: LU632_RS01670 - phage tail protein, at 328,998 to 329,486
_RS01670
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 326.246 kb on + strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.246 kb on + strand, within LU632_RS01650 at 326.247 kb on - strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.360 kb on + strand, within LU632_RS01650 at 326.361 kb on - strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.383 kb on + strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.384 kb on - strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.385 kb on + strand, within LU632_RS01650 at 326.386 kb on - strand, within LU632_RS01650 at 326.386 kb on - strand, within LU632_RS01650 at 326.404 kb on + strand, within LU632_RS01650 at 326.404 kb on + strand, within LU632_RS01650 at 326.405 kb on - strand, within LU632_RS01650 at 326.405 kb on - strand, within LU632_RS01650 at 326.648 kb on - strand at 326.648 kb on - strand at 326.681 kb on - strand at 326.749 kb on + strand, within LU632_RS01655 at 327.179 kb on - strand, within LU632_RS01655 at 327.179 kb on - strand, within LU632_RS01655 at 327.201 kb on - strand at 327.201 kb on - strand at 327.202 kb on + strand at 327.255 kb on - strand at 327.255 kb on - strand at 327.259 kb on - strand at 327.453 kb on - strand, within LU632_RS01660 at 327.464 kb on + strand, within LU632_RS01660 at 327.573 kb on + strand, within LU632_RS01660 at 327.658 kb on + strand, within LU632_RS01660 at 327.697 kb on - strand, within LU632_RS01660 at 327.729 kb on + strand, within LU632_RS01660 at 327.729 kb on + strand, within LU632_RS01660 at 327.730 kb on - strand, within LU632_RS01660 at 327.730 kb on - strand, within LU632_RS01660 at 327.730 kb on - strand, within LU632_RS01660 at 327.730 kb on - strand, within LU632_RS01660 at 327.755 kb on + strand, within LU632_RS01660 at 327.783 kb on + strand, within LU632_RS01660 at 327.800 kb on + strand, within LU632_RS01660 at 327.801 kb on - strand, within LU632_RS01660 at 327.806 kb on + strand, within LU632_RS01660 at 327.806 kb on + strand, within LU632_RS01660 at 327.807 kb on - strand, within LU632_RS01660 at 327.807 kb on - strand, within LU632_RS01660 at 327.807 kb on - strand, within LU632_RS01660 at 327.807 kb on - strand, within LU632_RS01660 at 327.807 kb on - strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.810 kb on + strand, within LU632_RS01660 at 327.811 kb on - strand, within LU632_RS01660 at 327.811 kb on - strand, within LU632_RS01660 at 327.811 kb on - strand, within LU632_RS01660 at 327.811 kb on - strand, within LU632_RS01660 at 327.813 kb on - strand, within LU632_RS01660 at 328.305 kb on + strand at 328.393 kb on + strand, within LU632_RS01665 at 328.394 kb on - strand, within LU632_RS01665 at 328.394 kb on - strand, within LU632_RS01665 at 328.394 kb on - strand, within LU632_RS01665 at 328.464 kb on - strand, within LU632_RS01665 at 328.493 kb on + strand, within LU632_RS01665 at 328.494 kb on - strand, within LU632_RS01665 at 328.494 kb on - strand, within LU632_RS01665 at 328.525 kb on + strand, within LU632_RS01665 at 328.581 kb on - strand, within LU632_RS01665 at 328.585 kb on + strand, within LU632_RS01665 at 328.586 kb on - strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.717 kb on - strand, within LU632_RS01665 at 328.722 kb on + strand, within LU632_RS01665 at 328.723 kb on - strand, within LU632_RS01665 at 328.772 kb on + strand, within LU632_RS01665 at 328.776 kb on + strand, within LU632_RS01665 at 328.776 kb on + strand, within LU632_RS01665 at 328.776 kb on + strand, within LU632_RS01665 at 328.777 kb on - strand, within LU632_RS01665 at 328.842 kb on - strand at 328.842 kb on - strand at 328.893 kb on - strand at 328.899 kb on + strand at 328.925 kb on + strand at 328.935 kb on + strand at 328.985 kb on + strand at 328.985 kb on + strand at 329.035 kb on + strand at 329.106 kb on + strand, within LU632_RS01670 at 329.206 kb on - strand, within LU632_RS01670 at 329.206 kb on - strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 326,246 + LU632_RS01650 0.55 +3.3 326,246 + LU632_RS01650 0.55 +0.6 326,246 + LU632_RS01650 0.55 -0.6 326,247 - LU632_RS01650 0.55 +1.2 326,360 + LU632_RS01650 0.68 -0.8 326,360 + LU632_RS01650 0.68 -0.1 326,360 + LU632_RS01650 0.68 -1.9 326,361 - LU632_RS01650 0.68 -1.3 326,383 + LU632_RS01650 0.70 -0.7 326,383 + LU632_RS01650 0.70 +0.1 326,383 + LU632_RS01650 0.70 -0.4 326,384 - LU632_RS01650 0.70 -1.6 326,384 - LU632_RS01650 0.70 -0.6 326,384 - LU632_RS01650 0.70 +0.7 326,384 - LU632_RS01650 0.70 +0.3 326,384 - LU632_RS01650 0.70 -0.2 326,385 + LU632_RS01650 0.70 -0.8 326,385 + LU632_RS01650 0.70 -1.5 326,385 + LU632_RS01650 0.70 +1.2 326,386 - LU632_RS01650 0.71 +0.2 326,386 - LU632_RS01650 0.71 -0.9 326,404 + LU632_RS01650 0.73 +0.2 326,404 + LU632_RS01650 0.73 -0.1 326,405 - LU632_RS01650 0.73 +0.1 326,405 - LU632_RS01650 0.73 -1.2 326,648 - -2.5 326,648 - -1.3 326,681 - +3.2 326,749 + LU632_RS01655 0.17 +0.7 327,179 - LU632_RS01655 0.87 +0.4 327,179 - LU632_RS01655 0.87 -1.1 327,201 - -1.2 327,201 - -0.5 327,202 + -0.4 327,255 - -1.5 327,255 - -1.3 327,259 - -1.2 327,453 - LU632_RS01660 0.21 -0.6 327,464 + LU632_RS01660 0.22 -1.1 327,573 + LU632_RS01660 0.33 +1.7 327,658 + LU632_RS01660 0.41 -0.1 327,697 - LU632_RS01660 0.45 +0.1 327,729 + LU632_RS01660 0.48 -1.3 327,729 + LU632_RS01660 0.48 -0.2 327,730 - LU632_RS01660 0.48 +0.9 327,730 - LU632_RS01660 0.48 -1.3 327,730 - LU632_RS01660 0.48 -1.6 327,730 - LU632_RS01660 0.48 +0.6 327,755 + LU632_RS01660 0.51 -0.2 327,783 + LU632_RS01660 0.54 +0.6 327,800 + LU632_RS01660 0.55 -1.7 327,801 - LU632_RS01660 0.55 +0.4 327,806 + LU632_RS01660 0.56 -0.1 327,806 + LU632_RS01660 0.56 -1.2 327,807 - LU632_RS01660 0.56 -1.2 327,807 - LU632_RS01660 0.56 -0.6 327,807 - LU632_RS01660 0.56 -1.9 327,807 - LU632_RS01660 0.56 -0.3 327,807 - LU632_RS01660 0.56 +0.6 327,810 + LU632_RS01660 0.56 -1.8 327,810 + LU632_RS01660 0.56 +0.5 327,810 + LU632_RS01660 0.56 +0.1 327,810 + LU632_RS01660 0.56 +0.2 327,810 + LU632_RS01660 0.56 -0.8 327,810 + LU632_RS01660 0.56 +0.2 327,810 + LU632_RS01660 0.56 -0.3 327,810 + LU632_RS01660 0.56 -1.3 327,810 + LU632_RS01660 0.56 -0.3 327,811 - LU632_RS01660 0.56 -0.5 327,811 - LU632_RS01660 0.56 +0.7 327,811 - LU632_RS01660 0.56 -0.4 327,811 - LU632_RS01660 0.56 +0.4 327,813 - LU632_RS01660 0.57 +0.2 328,305 + -1.8 328,393 + LU632_RS01665 0.24 -0.8 328,394 - LU632_RS01665 0.25 -3.5 328,394 - LU632_RS01665 0.25 -0.3 328,394 - LU632_RS01665 0.25 +0.0 328,464 - LU632_RS01665 0.36 -2.7 328,493 + LU632_RS01665 0.41 -0.2 328,494 - LU632_RS01665 0.41 +0.3 328,494 - LU632_RS01665 0.41 +0.2 328,525 + LU632_RS01665 0.47 +0.0 328,581 - LU632_RS01665 0.56 +0.1 328,585 + LU632_RS01665 0.57 +0.4 328,586 - LU632_RS01665 0.57 +0.9 328,716 + LU632_RS01665 0.79 -0.1 328,716 + LU632_RS01665 0.79 -1.3 328,716 + LU632_RS01665 0.79 +1.0 328,716 + LU632_RS01665 0.79 -1.3 328,717 - LU632_RS01665 0.79 -0.2 328,722 + LU632_RS01665 0.80 +0.1 328,723 - LU632_RS01665 0.80 +0.8 328,772 + LU632_RS01665 0.88 -0.6 328,776 + LU632_RS01665 0.89 -0.9 328,776 + LU632_RS01665 0.89 -0.1 328,776 + LU632_RS01665 0.89 -0.1 328,777 - LU632_RS01665 0.89 -0.6 328,842 - -0.3 328,842 - -0.1 328,893 - +1.1 328,899 + -1.4 328,925 + -0.7 328,935 + +1.0 328,985 + -1.0 328,985 + -1.7 329,035 + -0.8 329,106 + LU632_RS01670 0.22 -0.3 329,206 - LU632_RS01670 0.43 +0.2 329,206 - LU632_RS01670 0.43 +0.8 329,209 + LU632_RS01670 0.43 +0.2 329,209 + LU632_RS01670 0.43 +4.4 329,209 + LU632_RS01670 0.43 -2.3 329,209 + LU632_RS01670 0.43 -1.1 329,210 - LU632_RS01670 0.43 +1.2 329,210 - LU632_RS01670 0.43 -0.8 329,210 - LU632_RS01670 0.43 -0.3 329,210 - LU632_RS01670 0.43 +0.2 329,210 - LU632_RS01670 0.43 +0.7
Or see this region's nucleotide sequence