Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01470 and LU632_RS01475 are separated by 332 nucleotides LU632_RS01475 and LU632_RS01480 are separated by 84 nucleotides LU632_RS01480 and LU632_RS01485 are separated by 105 nucleotides LU632_RS01485 and LU632_RS01490 are separated by 126 nucleotides
LU632_RS01470: LU632_RS01470 - conjugal transfer protein TraG N-terminal domain-containing protein, at 300,622 to 301,386
_RS01470
LU632_RS01475: LU632_RS01475 - tyrosine-type recombinase/integrase, at 301,719 to 302,738
_RS01475
LU632_RS01480: LU632_RS01480 - helix-turn-helix domain-containing protein, at 302,823 to 303,104
_RS01480
LU632_RS01485: LU632_RS01485 - hypothetical protein, at 303,210 to 303,479
_RS01485
LU632_RS01490: LU632_RS01490 - IS91 family transposase, at 303,606 to 304,829
_RS01490
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 300.736 kb on - strand, within LU632_RS01470 at 300.736 kb on - strand, within LU632_RS01470 at 300.797 kb on + strand, within LU632_RS01470 at 300.797 kb on + strand, within LU632_RS01470 at 300.798 kb on - strand, within LU632_RS01470 at 300.798 kb on - strand, within LU632_RS01470 at 300.825 kb on + strand, within LU632_RS01470 at 300.826 kb on - strand, within LU632_RS01470 at 300.829 kb on + strand, within LU632_RS01470 at 300.829 kb on + strand, within LU632_RS01470 at 300.829 kb on + strand, within LU632_RS01470 at 300.830 kb on - strand, within LU632_RS01470 at 300.830 kb on - strand, within LU632_RS01470 at 300.830 kb on - strand, within LU632_RS01470 at 301.024 kb on + strand, within LU632_RS01470 at 301.028 kb on - strand, within LU632_RS01470 at 301.668 kb on - strand at 301.668 kb on - strand at 302.106 kb on - strand, within LU632_RS01475 at 302.336 kb on + strand, within LU632_RS01475 at 302.498 kb on - strand, within LU632_RS01475 at 302.587 kb on + strand, within LU632_RS01475 at 302.588 kb on - strand, within LU632_RS01475 at 302.588 kb on - strand, within LU632_RS01475 at 302.626 kb on + strand, within LU632_RS01475 at 302.627 kb on - strand, within LU632_RS01475 at 302.627 kb on - strand, within LU632_RS01475 at 302.694 kb on + strand at 302.694 kb on + strand at 302.695 kb on - strand at 302.695 kb on - strand at 302.695 kb on - strand at 302.695 kb on - strand at 302.738 kb on + strand at 302.739 kb on - strand at 302.798 kb on + strand at 302.798 kb on + strand at 302.799 kb on - strand at 302.799 kb on - strand at 302.802 kb on + strand at 302.806 kb on + strand at 302.853 kb on - strand, within LU632_RS01480 at 302.945 kb on + strand, within LU632_RS01480 at 302.958 kb on - strand, within LU632_RS01480 at 302.995 kb on + strand, within LU632_RS01480 at 302.996 kb on - strand, within LU632_RS01480 at 303.073 kb on - strand, within LU632_RS01480 at 303.174 kb on + strand at 303.378 kb on + strand, within LU632_RS01485
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 300,736 - LU632_RS01470 0.15 -0.1 300,736 - LU632_RS01470 0.15 -0.2 300,797 + LU632_RS01470 0.23 -0.3 300,797 + LU632_RS01470 0.23 -0.6 300,798 - LU632_RS01470 0.23 +0.8 300,798 - LU632_RS01470 0.23 -0.6 300,825 + LU632_RS01470 0.27 +0.3 300,826 - LU632_RS01470 0.27 -0.1 300,829 + LU632_RS01470 0.27 +1.0 300,829 + LU632_RS01470 0.27 -1.6 300,829 + LU632_RS01470 0.27 +0.3 300,830 - LU632_RS01470 0.27 -1.4 300,830 - LU632_RS01470 0.27 +1.0 300,830 - LU632_RS01470 0.27 -0.5 301,024 + LU632_RS01470 0.53 -0.7 301,028 - LU632_RS01470 0.53 +0.5 301,668 - +0.4 301,668 - +1.3 302,106 - LU632_RS01475 0.38 +0.6 302,336 + LU632_RS01475 0.60 -0.1 302,498 - LU632_RS01475 0.76 -1.1 302,587 + LU632_RS01475 0.85 -0.4 302,588 - LU632_RS01475 0.85 -0.2 302,588 - LU632_RS01475 0.85 +0.9 302,626 + LU632_RS01475 0.89 -0.3 302,627 - LU632_RS01475 0.89 -0.1 302,627 - LU632_RS01475 0.89 -0.2 302,694 + +1.2 302,694 + -2.5 302,695 - -1.7 302,695 - +1.8 302,695 - -1.4 302,695 - +0.7 302,738 + +1.8 302,739 - -2.1 302,798 + +1.9 302,798 + -0.4 302,799 - +1.3 302,799 - -1.2 302,802 + -1.4 302,806 + -0.4 302,853 - LU632_RS01480 0.11 -0.1 302,945 + LU632_RS01480 0.43 -0.7 302,958 - LU632_RS01480 0.48 +0.7 302,995 + LU632_RS01480 0.61 +0.4 302,996 - LU632_RS01480 0.61 +0.4 303,073 - LU632_RS01480 0.89 -0.7 303,174 + -0.3 303,378 + LU632_RS01485 0.62 +0.6
Or see this region's nucleotide sequence