Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01355

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01350 and LU632_RS01355 overlap by 4 nucleotidesLU632_RS01355 and LU632_RS01360 are separated by 299 nucleotides LU632_RS01350: LU632_RS01350 - lactonase family protein, at 283,363 to 284,469 _RS01350 LU632_RS01355: LU632_RS01355 - hypothetical protein, at 284,466 to 284,777 _RS01355 LU632_RS01360: LU632_RS01360 - YhgN family NAAT transporter, at 285,077 to 285,673 _RS01360 Position (kb) 284 285Strain fitness (log2 ratio) -2 -1 0 1 2 3at 283.593 kb on - strand, within LU632_RS01350at 283.654 kb on - strand, within LU632_RS01350at 283.654 kb on - strand, within LU632_RS01350at 283.659 kb on + strand, within LU632_RS01350at 283.660 kb on - strand, within LU632_RS01350at 283.687 kb on - strand, within LU632_RS01350at 283.695 kb on - strand, within LU632_RS01350at 283.730 kb on + strand, within LU632_RS01350at 283.730 kb on + strand, within LU632_RS01350at 283.731 kb on - strand, within LU632_RS01350at 283.806 kb on + strand, within LU632_RS01350at 283.807 kb on - strand, within LU632_RS01350at 283.807 kb on - strand, within LU632_RS01350at 283.830 kb on + strand, within LU632_RS01350at 283.832 kb on + strand, within LU632_RS01350at 283.832 kb on + strand, within LU632_RS01350at 283.833 kb on - strand, within LU632_RS01350at 283.833 kb on - strand, within LU632_RS01350at 283.838 kb on + strand, within LU632_RS01350at 283.942 kb on + strand, within LU632_RS01350at 283.943 kb on - strand, within LU632_RS01350at 284.035 kb on - strand, within LU632_RS01350at 284.108 kb on + strand, within LU632_RS01350at 284.261 kb on + strand, within LU632_RS01350at 284.262 kb on - strand, within LU632_RS01350at 284.262 kb on - strand, within LU632_RS01350at 284.263 kb on + strand, within LU632_RS01350at 284.263 kb on + strand, within LU632_RS01350at 284.263 kb on + strand, within LU632_RS01350at 284.264 kb on - strand, within LU632_RS01350at 284.264 kb on - strand, within LU632_RS01350at 284.427 kb on + strandat 284.431 kb on + strandat 284.431 kb on + strandat 284.431 kb on + strandat 284.431 kb on + strandat 284.431 kb on + strandat 284.432 kb on - strandat 284.522 kb on + strand, within LU632_RS01355at 284.523 kb on - strand, within LU632_RS01355at 284.578 kb on + strand, within LU632_RS01355at 284.579 kb on - strand, within LU632_RS01355at 284.579 kb on - strand, within LU632_RS01355at 284.627 kb on + strand, within LU632_RS01355at 284.627 kb on + strand, within LU632_RS01355at 284.647 kb on + strand, within LU632_RS01355at 284.647 kb on + strand, within LU632_RS01355at 284.648 kb on - strand, within LU632_RS01355at 284.648 kb on - strand, within LU632_RS01355at 284.648 kb on - strand, within LU632_RS01355at 284.652 kb on - strand, within LU632_RS01355at 284.652 kb on - strand, within LU632_RS01355at 284.723 kb on + strand, within LU632_RS01355at 284.759 kb on + strandat 284.856 kb on - strandat 284.856 kb on - strandat 284.857 kb on + strandat 284.857 kb on + strandat 284.900 kb on + strandat 284.901 kb on - strandat 284.901 kb on - strandat 284.901 kb on - strandat 284.935 kb on + strandat 284.958 kb on - strandat 284.984 kb on + strandat 284.984 kb on + strandat 284.985 kb on - strandat 284.985 kb on - strandat 284.985 kb on - strandat 285.090 kb on + strandat 285.091 kb on - strandat 285.215 kb on + strand, within LU632_RS01360at 285.216 kb on - strand, within LU632_RS01360at 285.270 kb on - strand, within LU632_RS01360at 285.270 kb on - strand, within LU632_RS01360at 285.440 kb on - strand, within LU632_RS01360at 285.601 kb on + strand, within LU632_RS01360at 285.601 kb on + strand, within LU632_RS01360at 285.644 kb on + strandat 285.645 kb on - strandat 285.647 kb on + strandat 285.696 kb on - strandat 285.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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283,593 - LU632_RS01350 0.21 -1.2
283,654 - LU632_RS01350 0.26 +0.0
283,654 - LU632_RS01350 0.26 +0.1
283,659 + LU632_RS01350 0.27 -0.6
283,660 - LU632_RS01350 0.27 -0.2
283,687 - LU632_RS01350 0.29 +2.3
283,695 - LU632_RS01350 0.30 +0.3
283,730 + LU632_RS01350 0.33 -0.4
283,730 + LU632_RS01350 0.33 -1.1
283,731 - LU632_RS01350 0.33 +0.4
283,806 + LU632_RS01350 0.40 -0.4
283,807 - LU632_RS01350 0.40 -0.1
283,807 - LU632_RS01350 0.40 +0.2
283,830 + LU632_RS01350 0.42 -0.1
283,832 + LU632_RS01350 0.42 +0.7
283,832 + LU632_RS01350 0.42 -1.2
283,833 - LU632_RS01350 0.42 -0.5
283,833 - LU632_RS01350 0.42 -2.5
283,838 + LU632_RS01350 0.43 +0.9
283,942 + LU632_RS01350 0.52 +0.7
283,943 - LU632_RS01350 0.52 +0.7
284,035 - LU632_RS01350 0.61 +0.8
284,108 + LU632_RS01350 0.67 +0.3
284,261 + LU632_RS01350 0.81 +1.3
284,262 - LU632_RS01350 0.81 -1.3
284,262 - LU632_RS01350 0.81 +2.8
284,263 + LU632_RS01350 0.81 +0.1
284,263 + LU632_RS01350 0.81 -1.2
284,263 + LU632_RS01350 0.81 +0.2
284,264 - LU632_RS01350 0.81 +1.7
284,264 - LU632_RS01350 0.81 +0.3
284,427 + -0.1
284,431 + -0.1
284,431 + -0.2
284,431 + -0.5
284,431 + -0.1
284,431 + -0.2
284,432 - -1.2
284,522 + LU632_RS01355 0.18 -0.8
284,523 - LU632_RS01355 0.18 -0.6
284,578 + LU632_RS01355 0.36 +1.5
284,579 - LU632_RS01355 0.36 -0.7
284,579 - LU632_RS01355 0.36 +0.0
284,627 + LU632_RS01355 0.52 +0.9
284,627 + LU632_RS01355 0.52 +0.4
284,647 + LU632_RS01355 0.58 +1.3
284,647 + LU632_RS01355 0.58 -0.1
284,648 - LU632_RS01355 0.58 +0.3
284,648 - LU632_RS01355 0.58 +0.2
284,648 - LU632_RS01355 0.58 +0.3
284,652 - LU632_RS01355 0.60 +0.5
284,652 - LU632_RS01355 0.60 +1.3
284,723 + LU632_RS01355 0.82 +0.0
284,759 + -1.1
284,856 - -1.0
284,856 - +0.3
284,857 + +0.4
284,857 + -2.0
284,900 + +0.2
284,901 - -2.1
284,901 - -1.3
284,901 - -1.0
284,935 + +0.3
284,958 - +0.1
284,984 + -0.5
284,984 + +0.9
284,985 - -1.6
284,985 - -1.4
284,985 - +1.7
285,090 + +0.6
285,091 - +0.2
285,215 + LU632_RS01360 0.23 -0.3
285,216 - LU632_RS01360 0.23 +0.8
285,270 - LU632_RS01360 0.32 -0.1
285,270 - LU632_RS01360 0.32 +1.7
285,440 - LU632_RS01360 0.61 +0.2
285,601 + LU632_RS01360 0.88 -0.8
285,601 + LU632_RS01360 0.88 -0.4
285,644 + +2.5
285,645 - -2.4
285,647 + +1.0
285,696 - -1.1
285,703 + +0.1

Or see this region's nucleotide sequence