Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00975 and nudC are separated by 85 nucleotides nudC and hemE are separated by 38 nucleotides hemE and nfi are separated by 1 nucleotides nfi and LU632_RS00995 are separated by 67 nucleotides
LU632_RS00975: LU632_RS00975 - Rsd/AlgQ family anti-sigma factor, at 212,121 to 212,630
_RS00975
LU632_RS00980: nudC - NAD(+) diphosphatase, at 212,716 to 213,489
nudC
LU632_RS00985: hemE - uroporphyrinogen decarboxylase, at 213,528 to 214,595
hemE
LU632_RS00990: nfi - deoxyribonuclease V, at 214,597 to 215,265
nfi
LU632_RS00995: LU632_RS00995 - YjaG family protein, at 215,333 to 215,923
_RS00995
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.530 kb on + strand, within LU632_RS00975 at 212.530 kb on + strand, within LU632_RS00975 at 212.533 kb on + strand, within LU632_RS00975 at 212.533 kb on + strand, within LU632_RS00975 at 212.681 kb on - strand at 212.715 kb on + strand at 212.716 kb on - strand at 212.716 kb on - strand at 212.738 kb on + strand at 212.899 kb on - strand, within nudC at 213.083 kb on - strand, within nudC at 213.108 kb on + strand, within nudC at 213.108 kb on + strand, within nudC at 213.109 kb on - strand, within nudC at 213.117 kb on + strand, within nudC at 213.154 kb on - strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.176 kb on - strand, within nudC at 213.176 kb on - strand, within nudC at 213.176 kb on - strand, within nudC at 213.277 kb on + strand, within nudC at 213.277 kb on + strand, within nudC at 213.277 kb on + strand, within nudC at 213.278 kb on - strand, within nudC at 213.337 kb on + strand, within nudC at 213.496 kb on + strand at 214.614 kb on - strand at 214.641 kb on - strand at 214.788 kb on - strand, within nfi at 214.788 kb on - strand, within nfi at 214.813 kb on + strand, within nfi at 214.813 kb on + strand, within nfi at 214.813 kb on + strand, within nfi at 214.813 kb on + strand, within nfi at 214.813 kb on + strand, within nfi at 214.813 kb on + strand, within nfi at 214.814 kb on - strand, within nfi at 214.814 kb on - strand, within nfi at 214.814 kb on - strand, within nfi at 214.814 kb on - strand, within nfi at 214.815 kb on + strand, within nfi at 214.816 kb on - strand, within nfi at 214.816 kb on - strand, within nfi at 215.103 kb on + strand, within nfi at 215.104 kb on - strand, within nfi at 215.337 kb on + strand at 215.338 kb on - strand at 215.338 kb on - strand at 215.341 kb on + strand at 215.342 kb on - strand at 215.389 kb on + strand at 215.390 kb on - strand at 215.390 kb on - strand at 215.430 kb on - strand, within LU632_RS00995 at 215.483 kb on - strand, within LU632_RS00995 at 215.530 kb on + strand, within LU632_RS00995 at 215.585 kb on + strand, within LU632_RS00995 at 215.595 kb on - strand, within LU632_RS00995
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 212,530 + LU632_RS00975 0.80 -0.3 212,530 + LU632_RS00975 0.80 -1.0 212,533 + LU632_RS00975 0.81 +0.7 212,533 + LU632_RS00975 0.81 -1.7 212,681 - -1.1 212,715 + +1.6 212,716 - -0.1 212,716 - -1.5 212,738 + +1.6 212,899 - nudC LU632_RS00980 0.24 -0.7 213,083 - nudC LU632_RS00980 0.47 -0.7 213,108 + nudC LU632_RS00980 0.51 -1.1 213,108 + nudC LU632_RS00980 0.51 -1.4 213,109 - nudC LU632_RS00980 0.51 -0.2 213,117 + nudC LU632_RS00980 0.52 -0.3 213,154 - nudC LU632_RS00980 0.57 +0.1 213,175 + nudC LU632_RS00980 0.59 -0.4 213,175 + nudC LU632_RS00980 0.59 -0.7 213,175 + nudC LU632_RS00980 0.59 -1.1 213,175 + nudC LU632_RS00980 0.59 -2.0 213,175 + nudC LU632_RS00980 0.59 +0.8 213,176 - nudC LU632_RS00980 0.59 -1.1 213,176 - nudC LU632_RS00980 0.59 -1.7 213,176 - nudC LU632_RS00980 0.59 -0.1 213,277 + nudC LU632_RS00980 0.72 -0.2 213,277 + nudC LU632_RS00980 0.72 -1.4 213,277 + nudC LU632_RS00980 0.72 -1.4 213,278 - nudC LU632_RS00980 0.73 -1.0 213,337 + nudC LU632_RS00980 0.80 +0.9 213,496 + +0.3 214,614 - -0.5 214,641 - +1.0 214,788 - nfi LU632_RS00990 0.29 -1.9 214,788 - nfi LU632_RS00990 0.29 -0.1 214,813 + nfi LU632_RS00990 0.32 -0.5 214,813 + nfi LU632_RS00990 0.32 +0.1 214,813 + nfi LU632_RS00990 0.32 +0.7 214,813 + nfi LU632_RS00990 0.32 -0.5 214,813 + nfi LU632_RS00990 0.32 -0.8 214,813 + nfi LU632_RS00990 0.32 +0.2 214,814 - nfi LU632_RS00990 0.32 -0.1 214,814 - nfi LU632_RS00990 0.32 +1.3 214,814 - nfi LU632_RS00990 0.32 -2.1 214,814 - nfi LU632_RS00990 0.32 -0.7 214,815 + nfi LU632_RS00990 0.33 +0.3 214,816 - nfi LU632_RS00990 0.33 +0.3 214,816 - nfi LU632_RS00990 0.33 -0.4 215,103 + nfi LU632_RS00990 0.76 -0.8 215,104 - nfi LU632_RS00990 0.76 -0.3 215,337 + -0.4 215,338 - -0.2 215,338 - -1.5 215,341 + +2.3 215,342 - -1.7 215,389 + -0.8 215,390 - -0.3 215,390 - +0.4 215,430 - LU632_RS00995 0.16 +2.6 215,483 - LU632_RS00995 0.25 -0.1 215,530 + LU632_RS00995 0.33 +2.5 215,585 + LU632_RS00995 0.43 -1.2 215,595 - LU632_RS00995 0.44 +0.1
Or see this region's nucleotide sequence