Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiC and LU632_RS00975 are separated by 311 nucleotides LU632_RS00975 and nudC are separated by 85 nucleotides nudC and hemE are separated by 38 nucleotides
LU632_RS00970: thiC - phosphomethylpyrimidine synthase ThiC, at 209,875 to 211,809
thiC
LU632_RS00975: LU632_RS00975 - Rsd/AlgQ family anti-sigma factor, at 212,121 to 212,630
_RS00975
LU632_RS00980: nudC - NAD(+) diphosphatase, at 212,716 to 213,489
nudC
LU632_RS00985: hemE - uroporphyrinogen decarboxylase, at 213,528 to 214,595
hemE
Position (kb) 212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 211.122 kb on + strand, within thiC at 211.152 kb on + strand, within thiC at 211.164 kb on + strand, within thiC at 211.329 kb on + strand, within thiC at 211.464 kb on + strand, within thiC at 211.465 kb on - strand, within thiC at 211.465 kb on - strand, within thiC at 211.537 kb on + strand, within thiC at 211.537 kb on + strand, within thiC at 211.537 kb on + strand, within thiC at 211.583 kb on + strand, within thiC at 211.809 kb on + strand at 211.810 kb on - strand at 211.860 kb on + strand at 211.860 kb on + strand at 211.861 kb on - strand at 211.930 kb on + strand at 211.930 kb on + strand at 212.028 kb on + strand at 212.042 kb on + strand at 212.074 kb on - strand at 212.093 kb on - strand at 212.094 kb on - strand at 212.150 kb on + strand at 212.195 kb on + strand, within LU632_RS00975 at 212.195 kb on + strand, within LU632_RS00975 at 212.198 kb on + strand, within LU632_RS00975 at 212.199 kb on - strand, within LU632_RS00975 at 212.272 kb on + strand, within LU632_RS00975 at 212.273 kb on - strand, within LU632_RS00975 at 212.313 kb on + strand, within LU632_RS00975 at 212.313 kb on + strand, within LU632_RS00975 at 212.314 kb on - strand, within LU632_RS00975 at 212.353 kb on + strand, within LU632_RS00975 at 212.403 kb on - strand, within LU632_RS00975 at 212.414 kb on - strand, within LU632_RS00975 at 212.441 kb on - strand, within LU632_RS00975 at 212.466 kb on - strand, within LU632_RS00975 at 212.530 kb on + strand, within LU632_RS00975 at 212.530 kb on + strand, within LU632_RS00975 at 212.533 kb on + strand, within LU632_RS00975 at 212.533 kb on + strand, within LU632_RS00975 at 212.681 kb on - strand at 212.715 kb on + strand at 212.716 kb on - strand at 212.716 kb on - strand at 212.738 kb on + strand at 212.899 kb on - strand, within nudC at 213.083 kb on - strand, within nudC at 213.108 kb on + strand, within nudC at 213.108 kb on + strand, within nudC at 213.109 kb on - strand, within nudC at 213.117 kb on + strand, within nudC at 213.154 kb on - strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.175 kb on + strand, within nudC at 213.176 kb on - strand, within nudC at 213.176 kb on - strand, within nudC at 213.176 kb on - strand, within nudC at 213.277 kb on + strand, within nudC at 213.277 kb on + strand, within nudC at 213.277 kb on + strand, within nudC at 213.278 kb on - strand, within nudC at 213.337 kb on + strand, within nudC at 213.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 211,122 + thiC LU632_RS00970 0.64 +0.2 211,152 + thiC LU632_RS00970 0.66 -0.2 211,164 + thiC LU632_RS00970 0.67 -1.2 211,329 + thiC LU632_RS00970 0.75 -2.1 211,464 + thiC LU632_RS00970 0.82 -1.1 211,465 - thiC LU632_RS00970 0.82 -0.7 211,465 - thiC LU632_RS00970 0.82 +0.7 211,537 + thiC LU632_RS00970 0.86 -1.1 211,537 + thiC LU632_RS00970 0.86 -1.1 211,537 + thiC LU632_RS00970 0.86 -0.5 211,583 + thiC LU632_RS00970 0.88 +1.0 211,809 + -2.4 211,810 - -1.0 211,860 + +0.3 211,860 + +0.6 211,861 - -0.5 211,930 + -1.1 211,930 + +0.5 212,028 + -0.5 212,042 + -0.0 212,074 - +3.9 212,093 - -0.7 212,094 - +0.6 212,150 + +0.5 212,195 + LU632_RS00975 0.15 -0.3 212,195 + LU632_RS00975 0.15 +1.5 212,198 + LU632_RS00975 0.15 +1.3 212,199 - LU632_RS00975 0.15 -0.2 212,272 + LU632_RS00975 0.30 -0.9 212,273 - LU632_RS00975 0.30 -0.4 212,313 + LU632_RS00975 0.38 +0.5 212,313 + LU632_RS00975 0.38 -1.2 212,314 - LU632_RS00975 0.38 +0.1 212,353 + LU632_RS00975 0.45 +0.9 212,403 - LU632_RS00975 0.55 -0.1 212,414 - LU632_RS00975 0.57 +0.1 212,441 - LU632_RS00975 0.63 +0.3 212,466 - LU632_RS00975 0.68 -1.4 212,530 + LU632_RS00975 0.80 -0.3 212,530 + LU632_RS00975 0.80 -1.0 212,533 + LU632_RS00975 0.81 +0.7 212,533 + LU632_RS00975 0.81 -1.7 212,681 - -1.1 212,715 + +1.6 212,716 - -0.1 212,716 - -1.5 212,738 + +1.6 212,899 - nudC LU632_RS00980 0.24 -0.7 213,083 - nudC LU632_RS00980 0.47 -0.7 213,108 + nudC LU632_RS00980 0.51 -1.1 213,108 + nudC LU632_RS00980 0.51 -1.4 213,109 - nudC LU632_RS00980 0.51 -0.2 213,117 + nudC LU632_RS00980 0.52 -0.3 213,154 - nudC LU632_RS00980 0.57 +0.1 213,175 + nudC LU632_RS00980 0.59 -0.4 213,175 + nudC LU632_RS00980 0.59 -0.7 213,175 + nudC LU632_RS00980 0.59 -1.1 213,175 + nudC LU632_RS00980 0.59 -2.0 213,175 + nudC LU632_RS00980 0.59 +0.8 213,176 - nudC LU632_RS00980 0.59 -1.1 213,176 - nudC LU632_RS00980 0.59 -1.7 213,176 - nudC LU632_RS00980 0.59 -0.1 213,277 + nudC LU632_RS00980 0.72 -0.2 213,277 + nudC LU632_RS00980 0.72 -1.4 213,277 + nudC LU632_RS00980 0.72 -1.4 213,278 - nudC LU632_RS00980 0.73 -1.0 213,337 + nudC LU632_RS00980 0.80 +0.9 213,496 + +0.3
Or see this region's nucleotide sequence