Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpD and ugpC are separated by 431 nucleotides ugpC and LU632_RS00810 are separated by 27 nucleotides LU632_RS00810 and LU632_RS00815 overlap by 11 nucleotides
LU632_RS00800: kdpD - two-component system sensor histidine kinase KdpD, at 172,267 to 174,939
kdpD
LU632_RS00805: ugpC - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 175,371 to 176,495
ugpC
LU632_RS00810: LU632_RS00810 - carbohydrate ABC transporter permease, at 176,523 to 177,362
_RS00810
LU632_RS00815: LU632_RS00815 - sugar ABC transporter permease, at 177,352 to 178,260
_RS00815
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 174.393 kb on + strand, within kdpD at 174.393 kb on + strand, within kdpD at 174.393 kb on + strand, within kdpD at 174.394 kb on - strand, within kdpD at 174.394 kb on - strand, within kdpD at 174.438 kb on - strand, within kdpD at 174.542 kb on + strand, within kdpD at 174.813 kb on + strand at 174.931 kb on + strand at 175.146 kb on + strand at 175.146 kb on + strand at 175.233 kb on + strand at 175.234 kb on - strand at 175.332 kb on + strand at 175.332 kb on + strand at 175.333 kb on - strand at 175.333 kb on - strand at 175.372 kb on + strand at 175.373 kb on - strand at 175.532 kb on + strand, within ugpC at 175.724 kb on + strand, within ugpC at 175.930 kb on + strand, within ugpC at 175.930 kb on + strand, within ugpC at 175.931 kb on - strand, within ugpC at 175.940 kb on + strand, within ugpC at 175.980 kb on + strand, within ugpC at 175.988 kb on + strand, within ugpC at 175.988 kb on + strand, within ugpC at 175.988 kb on + strand, within ugpC at 175.988 kb on + strand, within ugpC at 175.988 kb on + strand, within ugpC at 175.989 kb on - strand, within ugpC at 175.992 kb on + strand, within ugpC at 175.992 kb on + strand, within ugpC at 175.992 kb on + strand, within ugpC at 175.992 kb on + strand, within ugpC at 175.993 kb on - strand, within ugpC at 175.993 kb on - strand, within ugpC at 175.993 kb on - strand, within ugpC at 176.035 kb on - strand, within ugpC at 176.115 kb on + strand, within ugpC at 176.496 kb on - strand at 176.585 kb on + strand at 176.586 kb on - strand at 176.589 kb on + strand at 176.696 kb on + strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.697 kb on - strand, within LU632_RS00810 at 176.705 kb on + strand, within LU632_RS00810 at 176.719 kb on + strand, within LU632_RS00810 at 176.720 kb on - strand, within LU632_RS00810 at 176.867 kb on + strand, within LU632_RS00810 at 176.868 kb on - strand, within LU632_RS00810 at 176.920 kb on + strand, within LU632_RS00810 at 176.921 kb on - strand, within LU632_RS00810 at 176.946 kb on - strand, within LU632_RS00810 at 177.011 kb on + strand, within LU632_RS00810 at 177.011 kb on + strand, within LU632_RS00810 at 177.012 kb on - strand, within LU632_RS00810 at 177.012 kb on - strand, within LU632_RS00810 at 177.013 kb on + strand, within LU632_RS00810 at 177.013 kb on - strand, within LU632_RS00810 at 177.014 kb on - strand, within LU632_RS00810 at 177.014 kb on - strand, within LU632_RS00810 at 177.353 kb on + strand at 177.363 kb on - strand at 177.404 kb on + strand at 177.404 kb on + strand at 177.404 kb on + strand at 177.405 kb on - strand at 177.405 kb on - strand at 177.412 kb on + strand at 177.449 kb on + strand, within LU632_RS00815 at 177.495 kb on - strand, within LU632_RS00815
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 174,393 + kdpD LU632_RS00800 0.80 +0.7 174,393 + kdpD LU632_RS00800 0.80 -0.1 174,393 + kdpD LU632_RS00800 0.80 -1.3 174,394 - kdpD LU632_RS00800 0.80 -0.3 174,394 - kdpD LU632_RS00800 0.80 +0.7 174,438 - kdpD LU632_RS00800 0.81 +2.0 174,542 + kdpD LU632_RS00800 0.85 +0.7 174,813 + -0.9 174,931 + -1.1 175,146 + -0.8 175,146 + -1.4 175,233 + +0.7 175,234 - -0.3 175,332 + +0.3 175,332 + -1.6 175,333 - +3.5 175,333 - -0.0 175,372 + +4.4 175,373 - +0.6 175,532 + ugpC LU632_RS00805 0.14 +0.3 175,724 + ugpC LU632_RS00805 0.31 -1.5 175,930 + ugpC LU632_RS00805 0.50 -0.9 175,930 + ugpC LU632_RS00805 0.50 -2.1 175,931 - ugpC LU632_RS00805 0.50 -2.0 175,940 + ugpC LU632_RS00805 0.51 -0.8 175,980 + ugpC LU632_RS00805 0.54 -0.1 175,988 + ugpC LU632_RS00805 0.55 +0.2 175,988 + ugpC LU632_RS00805 0.55 +0.1 175,988 + ugpC LU632_RS00805 0.55 -1.3 175,988 + ugpC LU632_RS00805 0.55 -1.2 175,988 + ugpC LU632_RS00805 0.55 +0.0 175,989 - ugpC LU632_RS00805 0.55 -1.5 175,992 + ugpC LU632_RS00805 0.55 -2.1 175,992 + ugpC LU632_RS00805 0.55 +0.0 175,992 + ugpC LU632_RS00805 0.55 -0.7 175,992 + ugpC LU632_RS00805 0.55 -0.6 175,993 - ugpC LU632_RS00805 0.55 -0.9 175,993 - ugpC LU632_RS00805 0.55 +0.5 175,993 - ugpC LU632_RS00805 0.55 -2.1 176,035 - ugpC LU632_RS00805 0.59 +0.3 176,115 + ugpC LU632_RS00805 0.66 -1.1 176,496 - -0.3 176,585 + -1.9 176,586 - +1.0 176,589 + -0.7 176,696 + LU632_RS00810 0.21 -0.7 176,697 - LU632_RS00810 0.21 -2.3 176,697 - LU632_RS00810 0.21 -1.1 176,697 - LU632_RS00810 0.21 -1.8 176,697 - LU632_RS00810 0.21 -0.5 176,705 + LU632_RS00810 0.22 -0.3 176,719 + LU632_RS00810 0.23 +2.7 176,720 - LU632_RS00810 0.23 +0.6 176,867 + LU632_RS00810 0.41 -0.3 176,868 - LU632_RS00810 0.41 +0.5 176,920 + LU632_RS00810 0.47 -0.5 176,921 - LU632_RS00810 0.47 -1.3 176,946 - LU632_RS00810 0.50 -1.3 177,011 + LU632_RS00810 0.58 +1.9 177,011 + LU632_RS00810 0.58 -0.1 177,012 - LU632_RS00810 0.58 +0.3 177,012 - LU632_RS00810 0.58 -3.6 177,013 + LU632_RS00810 0.58 -0.9 177,013 - LU632_RS00810 0.58 -3.3 177,014 - LU632_RS00810 0.58 -0.9 177,014 - LU632_RS00810 0.58 +0.5 177,353 + -0.9 177,363 - +0.0 177,404 + -0.3 177,404 + -1.2 177,404 + +0.6 177,405 - -0.9 177,405 - -0.1 177,412 + -0.5 177,449 + LU632_RS00815 0.11 -1.4 177,495 - LU632_RS00815 0.16 -0.8
Or see this region's nucleotide sequence